dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: Bcin01g05710.1:RNA-p1

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Basic Information help

Species

Botrytis cinerea

Lineage

Ascomycota; Leotiomycetes; ; Sclerotiniaceae; Botrytis; Botrytis cinerea

CAZyme ID

Bcin01g05710.1:RNA-p1

CAZy Family

GT71

CAZyme Description

unspecified product

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
3007	bcin_chr_1\|CGC20	335697.24	7.0406

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_BcinereaB05-10	12073	332648	366	11707

Gene Location

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in Bcin01g05710.1:RNA-p1.

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
340841	GT4-like	1.94e-22	2476	2747	178	439	glycosyltransferase family 4 proteins. This family is most closely related to the GT4 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria, while some of them are also found in Archaea and eukaryotes.
223515	RfaB	8.59e-16	2564	2754	163	347	Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis].
411604	PelF	2.11e-15	2580	2753	287	461	GT4 family glycosyltransferase PelF. Proteins of this family are components of the exopolysaccharide Pel transporter. It has been reported that PelF is a soluble glycosyltransferase that uses UDP-glucose as the substrate for the synthesis of exopolysaccharide Pel, whereas PelG is a Wzx-like and PST family exopolysaccharide transporter.
340836	GT4_WbnK-like	1.06e-12	2560	2758	141	338	Shigella dysenteriae WbnK and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
340837	GT4_CapM-like	3.67e-12	2570	2742	155	322	capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. CapM in Staphylococcus aureus is required for the synthesis of type 1 capsular polysaccharides.

CAZyme Hits help

E-Value	Query Start	Query End	Hit Start
1	3007	1	3007
1	3007	1	3007
1	3007	1	3005
1	3007	1	3006
1	2828	1	2677

PDB Hits help

Bcin01g05710.1:RNA-p1 has no PDB hit.

Swiss-Prot Hits help

Bcin01g05710.1:RNA-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other	SP_Sec_SPI	CS Position
1.000106	0.000001

TMHMM Annotations download full data without filtering help

Start	End
22	44
883	905
925	947
960	982
992	1014
1027	1046
1050	1067
1247	1266
1304	1326
1333	1352
1390	1409
1813	1835