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CAZyme Information: ATCC64974_67840-t41_1-p1

You are here: Home > Sequence: ATCC64974_67840-t41_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Aspergillus niger
Lineage Ascomycota; Eurotiomycetes; ; Aspergillaceae; Aspergillus; Aspergillus niger
CAZyme ID ATCC64974_67840-t41_1-p1
CAZy Family GH5
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
370 OGUI01000010.1|CGC18 38734.97 3.7571
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_AnigerN402ATCC64974 11187 N/A 0 11187
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.15:80

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 47 368 1.4e-77 0.96

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395231 Glyco_hydro_28 1.95e-139 50 368 1 321
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
177865 PLN02218 4.30e-28 101 362 157 420
polygalacturonase ADPG
215540 PLN03010 1.83e-25 112 369 149 395
polygalacturonase
227721 Pgu1 2.25e-24 92 286 189 398
Polygalacturonase [Carbohydrate transport and metabolism].
178580 PLN03003 7.02e-22 109 327 120 334
Probable polygalacturonase At3g15720

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
3.93e-268 1 370 1 370
3.93e-268 1 370 1 370
3.93e-268 1 370 1 370
4.59e-267 1 370 1 370
1.08e-265 1 370 1 370

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4.90e-181 33 368 1 336
Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_B Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_C Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_D Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_E Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_F Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger]
9.23e-174 31 368 7 344
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
9.23e-174 31 368 7 344
Chain A, endo-polygalacturonase [Evansstolkia leycettana]
1.08e-170 35 368 3 336
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
2.80e-150 34 368 3 339
Polygalacturonase From Aspergillus Aculeatus [Aspergillus aculeatus],1IB4_A Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus],1IB4_B Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6.98e-269 1 370 1 370
Endopolygalacturonase A OS=Aspergillus niger OX=5061 GN=pgaA PE=1 SV=1
6.98e-269 1 370 1 370
Probable endopolygalacturonase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pgaA PE=3 SV=1
6.41e-265 1 370 1 370
Probable endopolygalacturonase A OS=Aspergillus kawachii (strain NBRC 4308) OX=1033177 GN=pgaA PE=3 SV=1
7.48e-264 1 370 1 370
Endopolygalacturonase A OS=Aspergillus awamori OX=105351 GN=pgaA PE=1 SV=1
1.55e-198 7 368 6 368
Probable endopolygalacturonase A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=pgaA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000293 0.999708 CS pos: 19-20. Pr: 0.9797

TMHMM  Annotations      help

There is no transmembrane helices in ATCC64974_67840-t41_1-p1.