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CAZyme Information: ATCC64974_52740-t41_1-p1

You are here: Home > Sequence: ATCC64974_52740-t41_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Aspergillus niger
Lineage Ascomycota; Eurotiomycetes; ; Aspergillaceae; Aspergillus; Aspergillus niger
CAZyme ID ATCC64974_52740-t41_1-p1
CAZy Family GH28|GH28
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
397 OGUI01000007.1|CGC20 43145.89 4.9892
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_AnigerN402ATCC64974 11187 N/A 0 11187
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in ATCC64974_52740-t41_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
CE8 56 370 4.2e-58 0.9409722222222222

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
178372 PLN02773 1.31e-25 58 353 16 275
pectinesterase
215367 PLN02682 1.04e-24 43 353 67 340
pectinesterase family protein
178051 PLN02432 3.06e-24 58 353 22 265
putative pectinesterase
215535 PLN02990 9.86e-24 59 353 271 531
Probable pectinesterase/pectinesterase inhibitor
395871 Pectinesterase 1.06e-21 58 353 11 271
Pectinesterase.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
3.25e-292 1 397 1 397
6.97e-283 1 397 1 399
6.97e-283 1 397 1 399
4.15e-170 5 394 5 385
4.15e-170 5 394 5 385

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5.58e-21 43 360 7 277
Crystal Structure of the Pectin Methylesterase from Aspergillus niger in Deglycosylated Form [Aspergillus niger ATCC 1015]
7.64e-21 43 360 7 277
Crystal Structure of the Pectin Methylesterase from Aspergillus niger in Penultimately Deglycosylated Form (N-acetylglucosamine Stub at Asn84) [Aspergillus niger ATCC 1015]
4.46e-09 48 354 7 317
Chain A, Pectinesterase A [Dickeya dadantii 3937],2NSP_B Chain B, Pectinesterase A [Dickeya dadantii 3937],2NST_A Chain A, Pectinesterase A [Dickeya dadantii 3937],2NST_B Chain B, Pectinesterase A [Dickeya dadantii 3937],2NT6_A Chain A, Pectinesterase A [Dickeya dadantii 3937],2NT6_B Chain B, Pectinesterase A [Dickeya dadantii 3937],2NT9_A Chain A, Pectinesterase A [Dickeya dadantii 3937],2NT9_B Chain B, Pectinesterase A [Dickeya dadantii 3937]
2.24e-08 58 353 14 274
Chain A, Pectinesterase 1 [Solanum lycopersicum]
2.73e-08 49 361 34 349
Pectin methylesterase from Yersinia enterocolitica [Yersinia enterocolitica subsp. enterocolitica 8081]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3.56e-21 10 360 7 305
Probable pectinesterase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pmeA PE=3 SV=1
1.37e-19 58 347 100 352
Probable pectinesterase 15 OS=Arabidopsis thaliana OX=3702 GN=PME15 PE=2 SV=1
6.92e-18 58 353 255 518
Probable pectinesterase/pectinesterase inhibitor 20 OS=Arabidopsis thaliana OX=3702 GN=PME20 PE=2 SV=2
1.27e-17 48 353 258 531
Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana OX=3702 GN=PME41 PE=2 SV=2
2.67e-17 41 360 30 302
Probable pectinesterase A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=pmeA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000239 0.999728 CS pos: 18-19. Pr: 0.9579

TMHMM  Annotations      help

There is no transmembrane helices in ATCC64974_52740-t41_1-p1.