logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: ATCC64974_33210-t41_1-p1

You are here: Home > Sequence: ATCC64974_33210-t41_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Aspergillus niger
Lineage Ascomycota; Eurotiomycetes; ; Aspergillaceae; Aspergillus; Aspergillus niger
CAZyme ID ATCC64974_33210-t41_1-p1
CAZy Family GH13
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
668 OGUI01000005.1|CGC4 72813.75 5.9687
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_AnigerN402ATCC64974 11187 N/A 0 11187
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in ATCC64974_33210-t41_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA3 37 665 8.1e-95 0.9947183098591549

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
225186 BetA 2.29e-56 55 658 25 528
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
235000 PRK02106 8.75e-56 309 658 216 526
choline dehydrogenase; Validated
398739 GMC_oxred_C 1.49e-31 518 658 5 142
GMC oxidoreductase. This domain found associated with pfam00732.
215420 PLN02785 3.53e-21 309 645 235 558
Protein HOTHEAD
366272 GMC_oxred_N 3.97e-15 138 414 19 218
GMC oxidoreductase. This family of proteins bind FAD as a cofactor.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 1 668 1 668
0.0 1 668 1 668
0.0 1 668 1 628
0.0 49 668 60 678
0.0 49 668 60 678

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4.59e-32 308 667 213 564
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]
6.15e-32 308 667 213 564
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]
7.62e-32 308 667 289 640
Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
8.26e-32 308 667 213 564
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRV_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRX_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRZ_AAA Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
8.26e-32 308 667 213 564
Chain A, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis],6ZH7_B Chain B, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
8.73e-39 138 661 75 523
Oxygen-dependent choline dehydrogenase OS=Brucella anthropi (strain ATCC 49188 / DSM 6882 / CCUG 24695 / JCM 21032 / LMG 3331 / NBRC 15819 / NCTC 12168 / Alc 37) OX=439375 GN=betA PE=3 SV=1
7.18e-38 61 663 70 576
Choline dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Chdh PE=1 SV=1
2.33e-37 61 663 67 573
Choline dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Chdh PE=1 SV=1
4.93e-37 49 667 47 611
Oxidoreductase cicC OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=cicC PE=1 SV=1
5.24e-37 52 664 19 531
Oxygen-dependent choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) OX=196600 GN=betA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.001865 0.998106 CS pos: 18-19. Pr: 0.9275

TMHMM  Annotations      help

There is no transmembrane helices in ATCC64974_33210-t41_1-p1.