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CAZyme Information: ATCC64974_10360-t41_1-p1

You are here: Home > Sequence: ATCC64974_10360-t41_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Aspergillus niger
Lineage Ascomycota; Eurotiomycetes; ; Aspergillaceae; Aspergillus; Aspergillus niger
CAZyme ID ATCC64974_10360-t41_1-p1
CAZy Family AA11
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
496 OGUI01000002.1|CGC2 50913.74 4.0705
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_AnigerN402ATCC64974 11187 N/A 0 11187
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.15:14 3.1.1.11:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 166 486 1.8e-68 0.8923076923076924

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395231 Glyco_hydro_28 3.10e-112 170 495 1 319
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
215426 PLN02793 9.93e-26 225 487 145 404
Probable polygalacturonase
177865 PLN02218 7.83e-23 222 489 157 417
polygalacturonase ADPG
227721 Pgu1 5.40e-19 132 438 75 421
Polygalacturonase [Carbohydrate transport and metabolism].
215540 PLN03010 1.04e-18 233 481 149 375
polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 2 496 1 495
0.0 2 496 1 495
0.0 2 496 1 495
0.0 2 496 1 495
0.0 1 496 1 496

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.22e-146 155 496 3 348
Endopolygalacturonase from the phytopathogenic fungus Fusarium moniliforme [Fusarium verticillioides]
1.67e-92 153 492 2 335
Polygalacturonase From Aspergillus Aculeatus [Aspergillus aculeatus],1IB4_A Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus],1IB4_B Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus]
1.10e-91 155 484 11 330
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
1.10e-91 155 484 11 330
Chain A, endo-polygalacturonase [Evansstolkia leycettana]
4.77e-91 155 484 3 322
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
0.0 2 496 1 495
Endopolygalacturonase D OS=Aspergillus niger OX=5061 GN=pgaD PE=3 SV=1
0.0 2 496 1 495
Probable endopolygalacturonase D OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pgaD PE=3 SV=1
6.83e-251 2 496 1 492
Probable endopolygalacturonase D OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pgaD PE=3 SV=2
1.95e-250 2 496 1 492
Probable endopolygalacturonase D OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pgaD PE=3 SV=1
3.05e-235 2 495 1 469
Probable endopolygalacturonase D OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=pgaD PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000376 0.999623 CS pos: 17-18. Pr: 0.9533

TMHMM  Annotations      help

There is no transmembrane helices in ATCC64974_10360-t41_1-p1.