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CAZyme Information: ASPNIDRAFT2_1153352-t41_1-p1

You are here: Home > Sequence: ASPNIDRAFT2_1153352-t41_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Aspergillus niger
Lineage Ascomycota; Eurotiomycetes; ; Aspergillaceae; Aspergillus; Aspergillus niger
CAZyme ID ASPNIDRAFT2_1153352-t41_1-p1
CAZy Family GH28
CAZyme Description Glycoside Hydrolase Family 28 protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
463 49741.39 4.6809
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_AnigerATCC1015 11910 380704 6 11904
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in ASPNIDRAFT2_1153352-t41_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 99 444 1.8e-60 0.9353846153846154

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395231 Glyco_hydro_28 7.94e-24 116 424 24 303
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
177865 PLN02218 1.01e-23 46 425 60 409
polygalacturonase ADPG
215120 PLN02188 7.54e-20 40 441 6 390
polygalacturonase/glycoside hydrolase family protein
215540 PLN03010 1.55e-18 61 443 43 391
polygalacturonase
178580 PLN03003 1.89e-17 164 458 119 392
Probable polygalacturonase At3g15720

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 1 463 1 463
0.0 1 463 1 463
6.44e-246 110 463 1 354
6.44e-246 110 463 1 354
1.62e-175 64 463 19 421

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3.19e-38 63 450 14 383
Crystal structure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis]
2.59e-09 78 431 5 338
Endopolygalacturonase from the phytopathogenic fungus Fusarium moniliforme [Fusarium verticillioides]
7.79e-09 89 441 2 333
Polygalacturonase From Aspergillus Aculeatus [Aspergillus aculeatus],1IB4_A Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus],1IB4_B Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
0.0 35 463 1 429
Alpha-L-rhamnosidase rgxB OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rgxB PE=2 SV=2
3.06e-74 37 442 4 430
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus niger OX=5061 GN=rgxA PE=2 SV=1
3.33e-73 37 442 4 430
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rgxA PE=2 SV=2
9.48e-68 68 449 31 435
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rgxA PE=3 SV=1
9.48e-68 68 449 31 435
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=rgxA PE=3 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000005 0.000000

TMHMM  Annotations      download full data without filtering help

Start End
7 24
34 56