CAZyme Information: ASPNIDRAFT2_1136270-t41_1-p1

Basic Information

• Species: Aspergillus niger
• Lineage: Ascomycota; Eurotiomycetes; ; Aspergillaceae; Aspergillus; Aspergillus niger
• CAZyme ID: ASPNIDRAFT2_1136270-t41_1-p1
• CAZy Family: GH13|GH13
• CAZyme Description: Polysaccharide Lyase Family 1 protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
373		39038.49	4.0650

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_AnigerATCC1015	11910	380704	6	11904

• Gene Location: location=ACJE01000011.1:92561-93929(+)

Full Sequence      

MKYAAALTAIAALAARAAAVGVSGTPVGFASSATGGGDATPVYPTTTDELVSYLGDDEAR
VIVLSKTFDFTDTEGTTTTTGCAPWGTASGCQLAINKDDWCTNYEPDAPTTTVTYNTAGE
LGITVNSNKSLIGEGTSGVIKGRGLRMVSGVSNIIIQNIAVTDINPEYVWGGDAITLDEA
DLVWIDHVTTARIGRQHYVLGTDADSRVSITNNYINGESDYSATCDGHHYWNVYLDGSSD
KVTFSGNYLYKTSGRAPKVQDNTYLHIYNNYWENNSGHAFEIGSGGYVLAEGNYFSNVDT
VLETDTFEGALFSSDSASSTCESYIGRSCVANVNGGDLTGTSTTVLSNLSGDTLPSADAA
STSPASNAGQGNL

Enzyme Prediction     

EC	4.2.2.10:25

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL1	112	297	3.3e-92	0.9946524064171123

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
214765	Amb_all	1.28e-57	113	299	2	190	Amb_all domain.
226384	PelB	1.29e-16	123	297	97	275	Pectate lyase [Carbohydrate transport and metabolism].
366158	Pec_lyase_C	1.79e-14	123	295	30	211	Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AAA32701.1|PL1_4|4.2.2.10	1.36e-265	1	373	1	373
CAK47350.1|PL1_4|4.2.2.10	1.94e-265	1	373	1	373
GAA92866.1|PL1_4|4.2.2.10	5.46e-256	1	373	1	373
BCR99717.1|PL1_4	5.46e-256	1	373	1	373
CAP80630.1|PL1_4	1.88e-224	1	373	1	373

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1IDJ_A	3.77e-175	20	373	1	359	Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]
1IDK_A	5.34e-175	20	373	1	359	Pectin Lyase A [Aspergillus niger]
1QCX_A	1.75e-154	21	357	2	341	Pectin Lyase B [Aspergillus niger]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|P22864|PELD_ASPNG	2.42e-266	1	373	1	373	Pectin lyase D OS=Aspergillus niger OX=5061 GN=pelD PE=1 SV=1
sp|A2RBL2|PELD_ASPNC	3.44e-266	1	373	1	373	Probable pectin lyase D OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelD PE=3 SV=1
sp|Q2TXS4|PELD_ASPOR	1.35e-206	1	373	1	375	Pectin lyase 2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pel2 PE=1 SV=1
sp|B8NVB7|PELD_ASPFN	1.35e-206	1	373	1	375	Probable pectin lyase D OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelD PE=3 SV=1
sp|B0YCL3|PELB_ASPFC	6.41e-198	1	373	1	375	Probable pectin lyase B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=pelB PE=3 SV=2

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000301	0.999672	CS pos: 19-20. Pr: 0.6901

TMHMM  Annotations     

There is no transmembrane helices in ASPNIDRAFT2_1136270-t41_1-p1.