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CAZyme Information: APA13447.1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Sclerotinia sclerotiorum | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Ascomycota; Leotiomycetes; ; Sclerotiniaceae; Sclerotinia; Sclerotinia sclerotiorum | |||||||||||
| CAZyme ID | APA13447.1 | |||||||||||
| CAZy Family | GH76 | |||||||||||
| CAZyme Description | unspecified product | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 118 | 311 | 1.3e-81 | 0.9946524064171123 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 214765 | Amb_all | 1.60e-44 | 116 | 313 | 1 | 190 | Amb_all domain. |
| 226384 | PelB | 1.87e-24 | 116 | 392 | 82 | 344 | Pectate lyase [Carbohydrate transport and metabolism]. |
| 366158 | Pec_lyase_C | 5.24e-11 | 105 | 309 | 5 | 211 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 4.56e-285 | 1 | 392 | 1 | 392 | |
| 1.74e-241 | 1 | 392 | 1 | 392 | |
| 1.74e-241 | 1 | 392 | 1 | 392 | |
| 3.53e-182 | 1 | 392 | 1 | 397 | |
| 7.03e-112 | 21 | 392 | 35 | 396 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 2.09e-105 | 20 | 391 | 1 | 359 | Pectin Lyase B [Aspergillus niger] |
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| 3.73e-95 | 21 | 392 | 2 | 359 | Pectin Lyase A [Aspergillus niger] |
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| 2.70e-92 | 21 | 392 | 2 | 359 | Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger] |
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| 4.26e-11 | 131 | 309 | 128 | 330 | Structure of the thermostable pectate lyase PL 47 [Bacillus sp. TS-47] |
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| 2.95e-10 | 136 | 332 | 80 | 283 | Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5.57e-107 | 14 | 391 | 15 | 379 | Probable pectin lyase B OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelB PE=3 SV=1 |
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| 2.31e-106 | 19 | 392 | 20 | 380 | Probable pectin lyase A OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=pelA PE=3 SV=1 |
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| 3.60e-105 | 10 | 392 | 10 | 379 | Pectin lyase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pelB PE=2 SV=1 |
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| 1.80e-104 | 19 | 382 | 19 | 368 | Probable pectin lyase B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=pelB PE=3 SV=2 |
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| 2.25e-103 | 14 | 391 | 15 | 378 | Pectin lyase B OS=Aspergillus niger OX=5061 GN=pelB PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.000278 | 0.999693 | CS pos: 19-20. Pr: 0.9757 |