logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: APA13113.1

You are here: Home > Sequence: APA13113.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Sclerotinia sclerotiorum
Lineage Ascomycota; Leotiomycetes; ; Sclerotiniaceae; Sclerotinia; Sclerotinia sclerotiorum
CAZyme ID APA13113.1
CAZy Family GH71
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
437 CP017823|CGC1 47421.07 4.8886
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Ssclerotiorum1980UF-70 11368 665079 238 11130
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in APA13113.1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 62 424 2.4e-61 0.9538461538461539

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395231 Glyco_hydro_28 1.02e-30 120 426 45 318
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
177865 PLN02218 4.29e-20 47 405 80 408
polygalacturonase ADPG
178580 PLN03003 2.19e-19 157 437 137 389
Probable polygalacturonase At3g15720
215426 PLN02793 5.33e-17 177 402 186 391
Probable polygalacturonase
215540 PLN03010 9.08e-16 163 416 156 384
polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 1 437 1 437
3.02e-267 1 436 1 437
4.29e-267 1 436 1 437
1.14e-257 1 437 1 436
1.77e-188 39 433 32 424

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3.00e-25 36 421 16 376
Crystal structure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis]
5.87e-19 121 391 71 318
Chain A, endo-polygalacturonase [Evansstolkia leycettana]
1.96e-18 121 391 71 318
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
2.43e-18 121 398 63 318
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
1.53e-17 121 406 67 322
Polygalacturonase From Aspergillus Aculeatus [Aspergillus aculeatus],1IB4_A Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus],1IB4_B Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.37e-187 39 436 30 423
Putative galacturan 1,4-alpha-galacturonidase C OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rgxC PE=2 SV=1
7.33e-173 35 433 28 422
Putative galacturan 1,4-alpha-galacturonidase C OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=rgxC PE=3 SV=1
1.53e-65 23 412 14 420
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rgxA PE=2 SV=2
5.95e-65 38 412 31 420
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus niger OX=5061 GN=rgxA PE=2 SV=1
1.61e-64 34 405 26 412
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=rgxA PE=3 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.001239 0.998741 CS pos: 18-19. Pr: 0.9674

TMHMM  Annotations      help

There is no transmembrane helices in APA13113.1.