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CAZyme Information: APA12794.1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Sclerotinia sclerotiorum | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Ascomycota; Leotiomycetes; ; Sclerotiniaceae; Sclerotinia; Sclerotinia sclerotiorum | |||||||||||
| CAZyme ID | APA12794.1 | |||||||||||
| CAZy Family | GH6 | |||||||||||
| CAZyme Description | unspecified product | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 3.2.1.171:11 |
|---|
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 215540 | PLN03010 | 1.01e-19 | 41 | 377 | 45 | 391 | polygalacturonase |
| 395231 | Glyco_hydro_28 | 2.28e-16 | 149 | 375 | 85 | 315 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| 177865 | PLN02218 | 3.75e-14 | 35 | 355 | 60 | 403 | polygalacturonase ADPG |
| 178580 | PLN03003 | 2.12e-13 | 44 | 367 | 25 | 364 | Probable polygalacturonase At3g15720 |
| 215426 | PLN02793 | 7.02e-12 | 12 | 382 | 33 | 423 | Probable polygalacturonase |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 0.0 | 1 | 444 | 1 | 444 | |
| 3.90e-301 | 1 | 444 | 1 | 444 | |
| 3.90e-301 | 1 | 444 | 1 | 444 | |
| 2.91e-294 | 1 | 443 | 1 | 443 | |
| 2.60e-198 | 15 | 444 | 11 | 439 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.04e-196 | 23 | 444 | 1 | 421 | Rhamnogalacturonase A From Aspergillus Aculeatus [Aspergillus aculeatus] |
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| 1.58e-14 | 55 | 385 | 28 | 385 | Crystal structure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis] |
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| 1.76e-07 | 199 | 381 | 167 | 347 | Endopolygalacturonase from the phytopathogenic fungus Fusarium moniliforme [Fusarium verticillioides] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.87e-198 | 16 | 444 | 12 | 439 | Rhamnogalacturonase A OS=Aspergillus aculeatus OX=5053 GN=rhgA PE=1 SV=1 |
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| 3.90e-181 | 7 | 443 | 5 | 443 | Probable rhamnogalacturonase B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=rhgB PE=3 SV=1 |
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| 6.75e-181 | 17 | 444 | 13 | 440 | Probable rhamnogalacturonase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rhgA PE=3 SV=1 |
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| 7.83e-181 | 7 | 443 | 5 | 443 | Probable rhamnogalacturonase B OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=rhgB PE=3 SV=1 |
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| 5.59e-180 | 17 | 444 | 12 | 439 | Rhamnogalacturonase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=rhgA PE=2 SV=2 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.000283 | 0.999702 | CS pos: 22-23. Pr: 0.9761 |