logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: APA12096.1

You are here: Home > Sequence: APA12096.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Sclerotinia sclerotiorum
Lineage Ascomycota; Leotiomycetes; ; Sclerotiniaceae; Sclerotinia; Sclerotinia sclerotiorum
CAZyme ID APA12096.1
CAZy Family GH5
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
619 68408.72 7.0239
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Ssclerotiorum1980UF-70 11368 665079 238 11130
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 1.1.3.4:9

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA3 39 599 1.4e-139 0.9929577464788732

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
235000 PRK02106 6.10e-55 35 599 1 531
choline dehydrogenase; Validated
225186 BetA 8.79e-55 37 603 5 537
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
398739 GMC_oxred_C 1.04e-37 452 594 1 143
GMC oxidoreductase. This domain found associated with pfam00732.
366272 GMC_oxred_N 1.94e-37 113 353 20 218
GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
215420 PLN02785 8.16e-13 39 341 55 316
Protein HOTHEAD

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 1 619 1 619
7.51e-262 8 603 3 600
7.96e-257 15 602 24 601
8.10e-257 11 602 1 582
2.27e-256 15 602 24 601

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.05e-257 15 602 2 579
GLUCOSE OXIDASE FROM APERGILLUS NIGER [Aspergillus niger],1GAL_A CRYSTAL STRUCTURE OF GLUCOSE OXIDASE FROM ASPERGILLUS NIGER: REFINED AT 2.3 ANGSTROMS RESOLUTION [Aspergillus niger],3QVP_A Crystal structure of glucose oxidase for space group C2221 at 1.2 A resolution [Aspergillus niger],3QVR_A Crystal structure of glucose oxidase for space group P3121 at 1.3 A resolution. [Aspergillus niger]
1.55e-256 28 602 6 577
Glucose oxidase mutant A2 [Aspergillus niger]
3.12e-256 28 602 6 577
Glucose oxydase mutant A2 [Aspergillus niger]
2.69e-239 26 602 11 583
Glucose Oxidase From Penicillium Amagasakiense [Penicillium amagasakiense],1GPE_B Glucose Oxidase From Penicillium Amagasakiense [Penicillium amagasakiense]
1.03e-102 35 595 1 561
Crystal structure of Aspergillus flavus FAD glucose dehydrogenase [Aspergillus flavus NRRL3357],4YNU_A Crystal structure of Aspergillus flavus FADGDH in complex with D-glucono-1,5-lactone [Aspergillus flavus NRRL3357]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.31e-256 15 602 24 601
Glucose oxidase OS=Aspergillus niger OX=5061 GN=gox PE=1 SV=1
1.38e-238 26 602 11 583
Glucose oxidase OS=Penicillium amagasakiense OX=63559 PE=1 SV=1
2.63e-233 26 602 29 601
Glucose oxidase OS=Talaromyces flavus OX=5095 GN=GOX PE=3 SV=1
1.26e-67 33 598 40 614
GMC oxidoreductase family protein Mala s 12 OS=Malassezia sympodialis (strain ATCC 42132) OX=1230383 GN=MSY001_2108 PE=1 SV=1
1.26e-67 33 598 40 614
GMC oxidoreductase family protein Mala s 12.0101 OS=Malassezia sympodialis OX=76777 PE=1 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000567 0.999374 CS pos: 19-20. Pr: 0.9588

TMHMM  Annotations      help

There is no transmembrane helices in APA12096.1.