CAZyme Information: APA10819.1

Basic Information

• Species: Sclerotinia sclerotiorum
• Lineage: Ascomycota; Leotiomycetes; ; Sclerotiniaceae; Sclerotinia; Sclerotinia sclerotiorum
• CAZyme ID: APA10819.1
• CAZy Family: GH3
• CAZyme Description: unspecified product

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
432	CP017820|CGC3	47384.86	4.7420

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_Ssclerotiorum1980UF-70	11368	665079	238	11130

• Gene Location: location=CP017820:186486-187913(+)

Full Sequence      

MLPQILFTALSFPALIFSHSSPEVSVLKEKICIVEPSTDGSDSAPAIIRAFSECGHNDGI
TTHGTVLFKNTTYNIQTVMNTTNLSNVKVDLHGTLLWSTNITYWLNNSLPVGYQNQSSAW
LFGGRNIHWDGHGYGTLDGNGEVWYEFINGTNNYPGRPHQITYTGVTDCVFENIRFVQSQ
MWTMTLIYAENILLENIYVNSTDVRPVGFEFSSLNTDGADTIYANNITFRGWTVDNGDDS
ISMKANSSNILIEDCDFHTGLGVAIGSIGQYEGKYEIVENITVRNIRSYNMRYGVYMKTW
TGLSTGYPPNGGGGGLGHAKNLSFTDFTLHNNTGIFAITQCTSYNSATGNCDTSLFQFSD
IRLRDWKGTATSDVVAELQCSGAAPCTGVVIEGMKGIWDTVNGTRPVQFLCDGVVGQEGF
NCTGKPFGENPR

Enzyme Prediction     

No EC number prediction in APA10819.1.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH28	66	395	6.4e-53	0.8615384615384616

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
177865	PLN02218	3.75e-23	39	395	78	407	polygalacturonase ADPG
395231	Glyco_hydro_28	1.57e-20	122	395	48	302	Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
215426	PLN02793	2.07e-20	85	392	109	390	Probable polygalacturonase
215120	PLN02188	3.60e-20	89	392	84	370	polygalacturonase/glycoside hydrolase family protein
165802	PLN02155	5.73e-20	135	428	122	384	polygalacturonase

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
APA10819.1|GH28	0.0	1	432	1	432
ATZ54631.1|GH28	3.83e-279	1	432	1	432
QSZ37346.1|GH28	4.52e-260	5	432	7	434
UJO14114.1|GH28	7.79e-209	47	432	16	401
CCD49058.1|GH28	4.77e-150	16	425	14	412

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1RMG_A	1.55e-07	217	416	177	355	Rhamnogalacturonase A From Aspergillus Aculeatus [Aspergillus aculeatus]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|A2QG68|RGXB_ASPNC	5.69e-135	5	424	9	417	Alpha-L-rhamnosidase rgxB OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rgxB PE=2 SV=2
sp|B8NJB0|RGXA_ASPFN	4.77e-74	16	422	16	435	Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=rgxA PE=3 SV=2
sp|Q2UP32|RGXA_ASPOR	4.77e-74	16	422	16	435	Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rgxA PE=3 SV=1
sp|Q2EQQ2|RGXA_ASPNG	2.70e-73	32	395	32	412	Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus niger OX=5061 GN=rgxA PE=2 SV=1
sp|A2QBB4|RGXA_ASPNC	1.06e-72	32	395	32	412	Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rgxA PE=2 SV=2

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000334	0.999607	CS pos: 18-19. Pr: 0.9791

TMHMM  Annotations     

There is no transmembrane helices in APA10819.1.