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CAZyme Information: APA10650.1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Sclerotinia sclerotiorum | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Ascomycota; Leotiomycetes; ; Sclerotiniaceae; Sclerotinia; Sclerotinia sclerotiorum | |||||||||||
| CAZyme ID | APA10650.1 | |||||||||||
| CAZy Family | GH3 | |||||||||||
| CAZyme Description | unspecified product | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| AA3 | 10 | 317 | 2.2e-83 | 0.5598591549295775 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 235000 | PRK02106 | 3.21e-60 | 10 | 451 | 7 | 499 | choline dehydrogenase; Validated |
| 225186 | BetA | 3.16e-57 | 10 | 451 | 9 | 501 | Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]. |
| 366272 | GMC_oxred_N | 2.87e-25 | 76 | 304 | 12 | 216 | GMC oxidoreductase. This family of proteins bind FAD as a cofactor. |
| 398739 | GMC_oxred_C | 2.57e-19 | 340 | 451 | 1 | 115 | GMC oxidoreductase. This domain found associated with pfam00732. |
| 215420 | PLN02785 | 3.24e-19 | 10 | 451 | 57 | 544 | Protein HOTHEAD |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 0.0 | 1 | 451 | 1 | 451 | |
| 2.99e-234 | 6 | 451 | 4 | 513 | |
| 4.64e-152 | 8 | 450 | 7 | 517 | |
| 4.64e-152 | 8 | 450 | 7 | 517 | |
| 4.64e-152 | 8 | 450 | 7 | 517 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 2.19e-38 | 10 | 450 | 7 | 531 | Crystal structure of Aspergillus flavus FAD glucose dehydrogenase [Aspergillus flavus NRRL3357],4YNU_A Crystal structure of Aspergillus flavus FADGDH in complex with D-glucono-1,5-lactone [Aspergillus flavus NRRL3357] |
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| 1.01e-36 | 5 | 451 | 10 | 494 | Chain A, Choline oxidase [Arthrobacter globiformis],3LJP_B Chain B, Choline oxidase [Arthrobacter globiformis] |
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| 1.38e-36 | 5 | 451 | 10 | 494 | Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_B Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_C Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_D Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_E Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_F Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_G Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_H Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis] |
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| 1.38e-36 | 5 | 451 | 10 | 494 | Crystal structure of choline oxidase reveals insights into the catalytic mechanism [Arthrobacter globiformis],2JBV_B Crystal structure of choline oxidase reveals insights into the catalytic mechanism [Arthrobacter globiformis],4MJW_A Crystal Structure of Choline Oxidase in Complex with the Reaction Product Glycine Betaine [Arthrobacter globiformis],4MJW_B Crystal Structure of Choline Oxidase in Complex with the Reaction Product Glycine Betaine [Arthrobacter globiformis] |
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| 1.89e-36 | 10 | 304 | 8 | 307 | Effect of mutation (R554A) on FAD modification in Aspergillus oryzae RIB40formate oxidase [Aspergillus oryzae RIB40],5ZU2_B Effect of mutation (R554A) on FAD modification in Aspergillus oryzae RIB40formate oxidase [Aspergillus oryzae RIB40],5ZU2_C Effect of mutation (R554A) on FAD modification in Aspergillus oryzae RIB40formate oxidase [Aspergillus oryzae RIB40] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.24e-78 | 10 | 450 | 6 | 485 | GMC-type oxidoreductase acuG OS=Aspergillus aculeatus (strain ATCC 16872 / CBS 172.66 / WB 5094) OX=690307 GN=acuG PE=3 SV=1 |
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| 8.22e-43 | 10 | 451 | 6 | 501 | Oxygen-dependent choline dehydrogenase OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 GN=betA PE=3 SV=1 |
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| 1.13e-42 | 10 | 451 | 6 | 501 | Oxygen-dependent choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1) OX=205922 GN=betA PE=3 SV=1 |
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| 1.07e-41 | 10 | 451 | 6 | 501 | Oxygen-dependent choline dehydrogenase OS=Pseudomonas fluorescens (strain SBW25) OX=216595 GN=betA PE=3 SV=1 |
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| 3.89e-41 | 10 | 345 | 8 | 343 | Oxygen-dependent choline dehydrogenase OS=Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 GN=betA PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 1.000029 | 0.000023 |