You are browsing environment: FUNGIDB
CAZyme Information: APA08661.1
You are here: Home > Sequence: APA08661.1
Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Sclerotinia sclerotiorum | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Ascomycota; Leotiomycetes; ; Sclerotiniaceae; Sclerotinia; Sclerotinia sclerotiorum | |||||||||||
| CAZyme ID | APA08661.1 | |||||||||||
| CAZy Family | GH132 | |||||||||||
| CAZyme Description | unspecified product | |||||||||||
| CAZyme Property |
|
|||||||||||
| Genome Property |
|
|||||||||||
| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 3.2.1.171:11 |
|---|
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 64 | 373 | 2e-49 | 0.9692307692307692 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 215540 | PLN03010 | 1.83e-17 | 41 | 374 | 48 | 391 | polygalacturonase |
| 177865 | PLN02218 | 4.93e-17 | 35 | 366 | 63 | 417 | polygalacturonase ADPG |
| 395231 | Glyco_hydro_28 | 1.94e-14 | 147 | 372 | 86 | 315 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| 165802 | PLN02155 | 8.20e-12 | 34 | 383 | 22 | 390 | polygalacturonase |
| 215120 | PLN02188 | 1.06e-11 | 41 | 372 | 38 | 390 | polygalacturonase/glycoside hydrolase family protein |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 0.0 | 1 | 562 | 1 | 562 | |
| 1.61e-288 | 1 | 451 | 1 | 452 | |
| 1.61e-288 | 1 | 451 | 1 | 452 | |
| 1.61e-288 | 1 | 451 | 1 | 452 | |
| 2.10e-258 | 1 | 447 | 1 | 447 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 7.94e-200 | 21 | 440 | 1 | 420 | Rhamnogalacturonase A From Aspergillus Aculeatus [Aspergillus aculeatus] |
|
| 1.32e-18 | 36 | 371 | 15 | 373 | Crystal structure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 7.20e-202 | 14 | 440 | 12 | 438 | Rhamnogalacturonase A OS=Aspergillus aculeatus OX=5053 GN=rhgA PE=1 SV=1 |
|
| 2.93e-199 | 1 | 465 | 1 | 468 | Probable rhamnogalacturonase B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=rhgB PE=3 SV=1 |
|
| 4.78e-198 | 1 | 465 | 1 | 468 | Probable rhamnogalacturonase B OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=rhgB PE=3 SV=1 |
|
| 4.01e-197 | 1 | 469 | 1 | 475 | Probable rhamnogalacturonase B OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rhgB PE=3 SV=1 |
|
| 2.64e-196 | 1 | 465 | 1 | 468 | Probable rhamnogalacturonase B OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=rhgB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.000225 | 0.999754 | CS pos: 20-21. Pr: 0.9685 |