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CAZyme Information: AN4882-T-p1

You are here: Home > Sequence: AN4882-T-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Aspergillus nidulans
Lineage Ascomycota; Eurotiomycetes; ; Aspergillaceae; Aspergillus; Aspergillus nidulans
CAZyme ID AN4882-T-p1
CAZy Family GH3
CAZyme Description Putative pectin lyase involved in degradation of pectin
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
464 ChrIII_A_nidulans_FGSC_A4|CGC2 48151.77 3.9801
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_AnidulansFGSCA4 10988 227321 276 10712
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.10:3

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 110 295 7.9e-89 0.9946524064171123

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
214765 Amb_all 5.23e-48 112 295 5 188
Amb_all domain.
226384 PelB 2.99e-25 121 378 97 344
Pectate lyase [Carbohydrate transport and metabolism].
366158 Pec_lyase_C 5.09e-15 114 293 23 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
404168 Beta_helix 7.57e-04 142 318 2 152
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
398638 NosD 0.007 131 295 10 151
Periplasmic copper-binding protein (NosD). NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 1 464 1 464
2.52e-256 1 392 1 392
3.90e-183 1 393 1 398
3.90e-183 1 393 1 398
3.90e-183 1 393 1 398

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5.94e-90 20 377 1 359
Pectin Lyase B [Aspergillus niger]
4.16e-87 22 378 3 359
Pectin Lyase A [Aspergillus niger]
3.29e-86 22 378 3 359
Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]
1.96e-14 126 308 80 261
Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5]
3.56e-09 121 276 76 253
Chain A, PECTATE LYASE E [Dickeya chrysanthemi]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
0.0 1 464 1 464
Probable pectin lyase F OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pelF PE=3 SV=1
6.94e-184 1 393 1 398
Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1
6.94e-184 1 393 1 398
Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2
2.84e-181 1 393 1 395
Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1
1.34e-173 1 391 1 393
Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000324 0.999628 CS pos: 20-21. Pr: 0.9714

TMHMM  Annotations      download full data without filtering help

Start End
7 29