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CAZyme Information: AMAG_07979-t26_1-p1

You are here: Home > Sequence: AMAG_07979-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Allomyces macrogynus
Lineage Blastocladiomycota; Blastocladiomycetes; ; Blastocladiaceae; Allomyces; Allomyces macrogynus
CAZyme ID AMAG_07979-t26_1-p1
CAZy Family GH26
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
410 GG745341|CGC1 43576.57 9.8066
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_AmacrogynusATCC38327 19333 578462 535 18798
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.10:3

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 129 317 1.3e-81 0.983957219251337

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
214765 Amb_all 2.27e-43 128 317 1 187
Amb_all domain.
226384 PelB 5.90e-20 8 410 2 344
Pectate lyase [Carbohydrate transport and metabolism].
366158 Pec_lyase_C 8.31e-11 141 316 32 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
3.01e-107 36 410 23 382
3.01e-107 36 410 23 382
3.01e-107 36 410 23 382
5.15e-104 38 410 23 383
6.55e-104 23 410 9 378

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.23e-80 36 410 3 359
Pectin Lyase A [Aspergillus niger]
4.31e-78 36 409 3 359
Pectin Lyase B [Aspergillus niger]
1.21e-77 36 410 3 359
Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]
4.28e-08 139 317 123 326
Chain A, Pectate lyase [Bacillus subtilis]
4.28e-08 139 317 123 326
Structural insights into the loss of catalytic competence in pectate lyase at low pH [Bacillus subtilis],5X2I_A Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide [Bacillus subtilis subsp. subtilis str. 168]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.62e-111 36 410 23 380
Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1
5.35e-108 36 410 23 382
Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2
5.35e-108 36 410 23 382
Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1
1.16e-104 23 410 9 378
Probable pectin lyase F OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pelF PE=3 SV=1
4.73e-98 36 410 24 383
Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000261 0.999714 CS pos: 29-30. Pr: 0.9741

TMHMM  Annotations      download full data without filtering help

Start End
13 35