CAZyme Information: ALNC14_121880:RNA-p1

Basic Information

• Species: Albugo laibachii
• Lineage: Oomycota; NA; ; Albuginaceae; Albugo; Albugo laibachii
• CAZyme ID: ALNC14_121880:RNA-p1
• CAZy Family: GT57
• CAZyme Description: unspecified product

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
584		65567.99	8.3889

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_AlaibachiiNc14	14629	890382	180	14449

• Gene Location: location=FR824387:18795-20701(+)

Full Sequence      

MRALTRFGSPKCIRRQKTLTSSRFITTKTAYDYIIIGGGSAGCVLANRLTEDGRNRVLLV
EAGLSDMHQWDSWKIHMPAALTYNLANDKYNWCYNTKPQKHLNNRRLSWPRGRVLGGSSS
INAMVYIRGHANDYNDWEKSGATGWSYEDCLPYFRKSQSHSLGANAYRGESGPLHVTRGN
QKNQILFQKFIDAAMQAGYPFTEDMNGYQQEGFGWMDMTIHNGRRWSAAQAYLWPAIKRP
NLKVITNTMTTKIEFQGRRATGIHTGCNKTHRQTQFHANKEIILSGGAINSPQLLLVSGV
GDADHLKQVDVPLVHHLPAVGQNLEDHLDLYLQYECTQPITLHHATWKYPHHMLQIALEW
LVFQTGWGASAHLESGGFIRSAPGKCQPDLQYHFLPGALTGQLTPGNRHAMQAHCSPMRA
TSRGSIKLRSADPRAHPIIDPNYLDTLQDRIDIRAAVRLTREIFEQETLDSYRGNAISPS
ANVESDEEIDTWVRQHAESAYHPSCTNRMGSESDSVVNTQLEIYGLEGLRVVDASVMPNI
ISGNLNAPTIMLAEKAADIILGNEPLPKESVPVYEPSNWRNSQR

Enzyme Prediction     

No EC number prediction in ALNC14_121880:RNA-p1.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
AA3	30	561	1.4e-168	0.9929577464788732

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
235000	PRK02106	0.0	26	584	1	555	choline dehydrogenase; Validated
225186	BetA	0.0	31	566	8	539	Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
366272	GMC_oxred_N	3.65e-62	31	329	1	218	GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
398739	GMC_oxred_C	2.15e-44	421	556	2	143	GMC oxidoreductase. This domain found associated with pfam00732.
215420	PLN02785	1.02e-21	29	552	54	568	Protein HOTHEAD

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UIZ28087.1|AA3_2	6.90e-312	9	584	8	581
ANI26486.1|AA3_2	7.94e-233	30	576	70	617
AWP09430.1|AA3_2	3.07e-232	20	584	10	573
CAB3230510.1|AA3_2	3.43e-230	13	583	7	578
CEF60566.1|AA3_2	9.47e-200	33	566	35	574

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5NCC_A	8.00e-88	16	562	9	578	Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_B Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_C Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_D Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_E Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis],5NCC_F Structure of Fatty acid Photodecarboxylase in complex with FAD and palmitic acid [Chlorella variabilis]
6ZH7_A	2.91e-87	31	562	8	562	Chain A, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis],6ZH7_B Chain B, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
6YRU_AAA	2.91e-87	31	562	8	562	Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRV_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRX_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRZ_AAA Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
6YS1_AAA	4.08e-87	31	562	8	562	Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]
7AV4_AAA	4.73e-87	16	562	69	638	Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q8BJ64|CHDH_MOUSE	7.03e-232	28	576	40	589	Choline dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Chdh PE=1 SV=1
sp|Q6UPE0|CHDH_RAT	3.64e-230	28	576	43	592	Choline dehydrogenase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Chdh PE=1 SV=1
sp|Q8NE62|CHDH_HUMAN	1.15e-227	27	576	37	587	Choline dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=CHDH PE=1 SV=2
sp|Q48CM7|BETA_PSE14	6.38e-188	25	574	1	549	Oxygen-dependent choline dehydrogenase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) OX=264730 GN=betA PE=3 SV=1
sp|Q4ZM63|BETA_PSEU2	9.03e-188	25	574	1	549	Oxygen-dependent choline dehydrogenase OS=Pseudomonas syringae pv. syringae (strain B728a) OX=205918 GN=betA PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	CS Position
1.000051	0.000002

TMHMM  Annotations     

There is no transmembrane helices in ALNC14_121880:RNA-p1.