You are browsing environment: FUNGIDB
CAZyme Information: ALNC14_095080:RNA-p1
You are here: Home > Sequence: ALNC14_095080:RNA-p1
Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Albugo laibachii | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Albuginaceae; Albugo; Albugo laibachii | |||||||||||
| CAZyme ID | ALNC14_095080:RNA-p1 | |||||||||||
| CAZy Family | GH5|CBM43 | |||||||||||
| CAZyme Description | Ca2 :Cation Antiporter (CaCA) Family putative | |||||||||||
| CAZyme Property |
|
|||||||||||
| Genome Property |
|
|||||||||||
| Gene Location | ||||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH18 | 532 | 809 | 9.2e-25 | 0.9256756756756757 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 223464 | ChaA | 4.50e-82 | 121 | 457 | 15 | 356 | Ca2+/H+ antiporter [Inorganic ion transport and metabolism]. |
| 273297 | caca2 | 1.10e-81 | 116 | 455 | 2 | 352 | calcium/proton exchanger. The Ca2+:Cation Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA family are found ubiquitously, having been identified in animals, plants, yeast, archaea and widely divergent bacteria.All of the characterized animal proteins catalyze Ca2+:Na+ exchange although some also transport K+. The NCX1 plasma membrane protein exchanges 3 Na+ for 1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+ antiport but may also catalyze Na+:H+ antiport. All remaining well-characterized members of the family catalyze Ca2+:H+ exchange.This model is generated from the calcium ion/proton exchangers of the CacA family. [Transport and binding proteins, Cations and iron carrying compounds] |
| 119355 | GH18_SI-CLP | 1.27e-80 | 528 | 808 | 2 | 309 | Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages. |
| 273043 | cax | 1.77e-77 | 124 | 457 | 1 | 340 | calcium/proton exchanger (cax). [Transport and binding proteins, Cations and iron carrying compounds] |
| 119353 | GH18_CFLE_spore_hydrolase | 4.03e-25 | 530 | 809 | 3 | 305 | Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 0.0 | 1 | 828 | 1 | 828 | |
| 0.0 | 1 | 828 | 1 | 827 | |
| 0.0 | 1 | 828 | 1 | 831 | |
| 0.0 | 1 | 828 | 1 | 828 | |
| 0.0 | 1 | 808 | 1 | 808 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 2.38e-81 | 104 | 453 | 28 | 388 | VCX1 Calcium/Proton Exchanger [Saccharomyces cerevisiae S288C],4K1C_B VCX1 Calcium/Proton Exchanger [Saccharomyces cerevisiae S288C] |
|
| 1.91e-57 | 129 | 457 | 14 | 340 | Structure of native YfkE [Bacillus subtilis subsp. subtilis str. 168],4KJS_B Structure of native YfkE [Bacillus subtilis subsp. subtilis str. 168] |
|
| 1.59e-54 | 129 | 457 | 14 | 340 | Crystal structure of selenium substituted Ca2+/H+ antiporter proteinYfkE [Bacillus subtilis subsp. subtilis str. 168],4KJR_B Crystal structure of selenium substituted Ca2+/H+ antiporter proteinYfkE [Bacillus subtilis subsp. subtilis str. 168] |
|
| 4.01e-46 | 505 | 808 | 50 | 384 | Crystal Structure of Stabilin-1 Interacting Chitinase-Like Protein, SI-CLP [Homo sapiens],3BXW_B Crystal Structure of Stabilin-1 Interacting Chitinase-Like Protein, SI-CLP [Homo sapiens] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 9.15e-81 | 104 | 453 | 23 | 383 | Vacuolar calcium ion transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=VCX1 PE=1 SV=1 |
|
| 1.31e-80 | 73 | 455 | 13 | 397 | Vacuolar calcium ion transporter OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=vcx1 PE=3 SV=1 |
|
| 2.82e-78 | 88 | 455 | 44 | 415 | Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CAX2 PE=2 SV=2 |
|
| 9.06e-76 | 124 | 455 | 11 | 353 | Ca(2+)/H(+) antiporter OS=Aphanothece halophytica OX=72020 PE=1 SV=1 |
|
| 3.30e-70 | 91 | 455 | 23 | 396 | Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica OX=39947 GN=CAX3 PE=2 SV=2 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.999968 | 0.000052 |
TMHMM Annotations download full data without filtering help
| Start | End |
|---|---|
| 115 | 137 |
| 144 | 163 |
| 173 | 195 |
| 208 | 230 |
| 245 | 264 |
| 277 | 299 |
| 322 | 344 |
| 357 | 376 |
| 391 | 413 |
| 420 | 442 |