You are browsing environment: FUNGIDB
CAZyme Information: ALNC14_093250:RNA-p1
You are here: Home > Sequence: ALNC14_093250:RNA-p1
Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Albugo laibachii | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Albuginaceae; Albugo; Albugo laibachii | |||||||||||
| CAZyme ID | ALNC14_093250:RNA-p1 | |||||||||||
| CAZy Family | GH5 | |||||||||||
| CAZyme Description | unspecified product | |||||||||||
| CAZyme Property |
|
|||||||||||
| Genome Property |
|
|||||||||||
| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 2.4.1.12:3 |
|---|
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GT2 | 815 | 1081 | 9.6e-18 | 0.3628808864265928 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 133043 | CESA_CelA_like | 1.24e-53 | 542 | 882 | 1 | 234 | CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end. |
| 236918 | bcsA | 1.56e-30 | 533 | 881 | 248 | 491 | cellulose synthase catalytic subunit; Provisional |
| 133057 | CESA_NdvC_like | 2.01e-21 | 691 | 884 | 70 | 234 | NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response. |
| 224136 | BcsA | 9.28e-20 | 493 | 1036 | 9 | 430 | Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase [Cell motility]. |
| 215121 | PLN02189 | 1.59e-16 | 512 | 1079 | 298 | 990 | cellulose synthase |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 0.0 | 1 | 1130 | 1 | 1130 | |
| 0.0 | 1 | 1129 | 1 | 1129 | |
| 0.0 | 1 | 1124 | 1 | 1123 | |
| 0.0 | 5 | 1130 | 6 | 1134 | |
| 0.0 | 1 | 1130 | 1 | 1131 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3.97e-25 | 499 | 969 | 235 | 577 | Chain A, Cellulose synthase catalytic subunit [UDP-forming] [Escherichia coli K-12] |
|
| 6.62e-25 | 489 | 1013 | 79 | 499 | Chain A, Putative cellulose synthase [Cereibacter sphaeroides 2.4.1] |
|
| 7.88e-25 | 489 | 1013 | 91 | 511 | Chain A, Cellulose Synthase Subunit A [Cereibacter sphaeroides] |
|
| 7.89e-25 | 489 | 1013 | 92 | 512 | Chain A, Cellulose Synthase A subunit [Cereibacter sphaeroides 2.4.1],4P02_A Chain A, Cellulose Synthase subunit A [Cereibacter sphaeroides 2.4.1],5EIY_A Chain A, Putative cellulose synthase [Cereibacter sphaeroides 2.4.1],5EJZ_A Chain A, Putative cellulose synthase [Cereibacter sphaeroides 2.4.1] |
|
| 4.16e-13 | 484 | 1079 | 203 | 939 | Structure of homotrimeric poplar cellulose synthase isoform 8 [Populus tremula x Populus tremuloides],6WLB_B Structure of homotrimeric poplar cellulose synthase isoform 8 [Populus tremula x Populus tremuloides],6WLB_C Structure of homotrimeric poplar cellulose synthase isoform 8 [Populus tremula x Populus tremuloides] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4.77e-41 | 657 | 992 | 564 | 876 | Cellulose synthase catalytic subunit A [UDP-forming] OS=Dictyostelium discoideum OX=44689 GN=dcsA PE=1 SV=1 |
|
| 2.23e-25 | 499 | 1002 | 235 | 602 | Cellulose synthase catalytic subunit [UDP-forming] OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=bcsA PE=3 SV=1 |
|
| 2.93e-25 | 499 | 1002 | 235 | 602 | Cellulose synthase catalytic subunit [UDP-forming] OS=Salmonella typhi OX=90370 GN=bcsA PE=3 SV=1 |
|
| 1.21e-24 | 499 | 1000 | 111 | 478 | Cellulose synthase catalytic subunit [UDP-forming] OS=Komagataeibacter sucrofermentans (strain ATCC 700178 / DSM 15973 / CECT 7291 / JCM 9730 / LMG 18788 / BPR 2001) OX=1307942 GN=bcsA PE=3 SV=1 |
|
| 2.00e-24 | 499 | 969 | 235 | 577 | Cellulose synthase catalytic subunit [UDP-forming] OS=Escherichia coli (strain K12) OX=83333 GN=bcsA PE=1 SV=3 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 1.000033 | 0.000000 |
TMHMM Annotations download full data without filtering help
| Start | End |
|---|---|
| 7 | 24 |
| 34 | 56 |
| 63 | 85 |
| 90 | 107 |
| 127 | 146 |
| 209 | 231 |
| 421 | 443 |
| 494 | 516 |
| 920 | 942 |
| 946 | 968 |
| 988 | 1007 |
| 1027 | 1049 |
| 1056 | 1078 |
| 1093 | 1115 |