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CAZyme Information: ALNC14_084210:RNA-p1

You are here: Home > Sequence: ALNC14_084210:RNA-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Albugo laibachii
Lineage Oomycota; NA; ; Albuginaceae; Albugo; Albugo laibachii
CAZyme ID ALNC14_084210:RNA-p1
CAZy Family GH5
CAZyme Description conserved hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
365 42096.14 9.0160
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_AlaibachiiNc14 14629 890382 180 14449
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 2.4.1.-:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT60 36 339 1.9e-59 0.9939393939393939

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
371506 GlcNAc 2.55e-14 137 339 127 349
Glycosyltransferase (GlcNAc). GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1, a ubiquitous eukaryotic protein, in the cytoplasm.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
3.62e-266 1 365 1 365
1.12e-70 36 363 116 458
1.23e-29 23 363 78 412
7.78e-29 19 363 47 385
9.61e-17 36 338 320 615

PDB Hits      help

ALNC14_084210:RNA-p1 has no PDB hit.

Swiss-Prot Hits      help

ALNC14_084210:RNA-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000200 0.999754 CS pos: 18-19. Pr: 0.9754

TMHMM  Annotations      help

There is no transmembrane helices in ALNC14_084210:RNA-p1.