logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: ALNC14_082860:RNA-p1

You are here: Home > Sequence: ALNC14_082860:RNA-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Albugo laibachii
Lineage Oomycota; NA; ; Albuginaceae; Albugo; Albugo laibachii
CAZyme ID ALNC14_082860:RNA-p1
CAZy Family GH5
CAZyme Description putative endo1
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
352 39041.52 6.2480
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_AlaibachiiNc14 14629 890382 180 14449
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in ALNC14_082860:RNA-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH17 44 305 8.9e-27 0.9485530546623794

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
227625 Scw11 3.26e-47 27 302 46 305
Exo-beta-1,3-glucanase, GH17 family [Carbohydrate transport and metabolism].
366033 Glyco_hydro_17 2.26e-16 28 305 2 304
Glycosyl hydrolases family 17.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
6.87e-253 1 352 1 352
2.75e-74 10 307 12 308
1.57e-71 18 309 8 298
9.44e-69 10 306 12 307
1.42e-61 8 310 3 309

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.10e-33 28 305 39 289
Crystal structure of glycoside hydrolase family 17 beta-1,3-glucanosyltransferase from Rhizomucor miehei [Rhizomucor miehei CAU432]
8.08e-33 28 305 39 289
Active-site mutant of Rhizomucor miehei beta-1,3-glucanosyltransferase in complex with laminaribiose [Rhizomucor miehei CAU432],4WTS_A Active-site mutant of Rhizomucor miehei beta-1,3-glucanosyltransferase in complex with laminaritriose [Rhizomucor miehei CAU432]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4.17e-30 46 305 40 305
Glucan 1,3-beta-glucosidase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=BGL2 PE=1 SV=1
1.92e-27 46 305 35 300
Glucan 1,3-beta-glucosidase BGL2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=BGL2 PE=1 SV=2
2.66e-27 46 305 35 300
Glucan 1,3-beta-glucosidase OS=Candida albicans OX=5476 GN=BGL2 PE=3 SV=1
6.90e-26 45 305 36 296
Glucan 1,3-beta-glucosidase ARB_02797 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) OX=663331 GN=ARB_02797 PE=1 SV=1
3.02e-24 46 305 55 313
Glucan 1,3-beta-glucosidase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=bgl2 PE=2 SV=4

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000244 0.999725 CS pos: 21-22. Pr: 0.9671

TMHMM  Annotations      help

There is no transmembrane helices in ALNC14_082860:RNA-p1.