logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: ALNC14_063580:RNA-p1

You are here: Home > Sequence: ALNC14_063580:RNA-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Albugo laibachii
Lineage Oomycota; NA; ; Albuginaceae; Albugo; Albugo laibachii
CAZyme ID ALNC14_063580:RNA-p1
CAZy Family GH28
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
583 66777.94 6.5556
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_AlaibachiiNc14 14629 890382 180 14449
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.21:2 3.2.1.23:1 3.2.1.38:1 3.2.1.-:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH1 21 504 1.8e-138 0.9883449883449883

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395176 Glyco_hydro_1 6.76e-146 19 506 1 453
Glycosyl hydrolase family 1.
274539 BGL 3.39e-119 24 497 1 426
beta-galactosidase.
225343 BglB 5.52e-113 23 508 4 457
Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].
215435 PLN02814 2.79e-85 1 497 6 476
beta-glucosidase
215455 PLN02849 1.83e-83 6 506 4 486
beta-glucosidase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 1 583 1 583
3.38e-212 21 505 30 514
1.81e-208 17 518 7 507
5.74e-131 71 507 5 419
2.78e-97 21 507 4 462

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
8.16e-89 17 507 6 451
Chain A, ANCESTRAL RECONSTRUCTED GLYCOSIDASE [synthetic construct],6Z1H_B Chain B, ANCESTRAL RECONSTRUCTED GLYCOSIDASE [synthetic construct],6Z1M_A Chain A, Ancestral reconstructed glycosidase [synthetic construct],6Z1M_B Chain B, Ancestral reconstructed glycosidase [synthetic construct],6Z1M_C Chain C, Ancestral reconstructed glycosidase [synthetic construct]
1.81e-85 23 502 22 481
Chain A, Beta-glucosidase 42 [Arabidopsis thaliana]
1.21e-80 23 503 17 488
Crystal Structure of a Rice Os3BGlu6 Beta-Glucosidase [Oryza sativa Japonica Group],3GNP_A Crystal Structure of a Rice Os3BGlu6 Beta-Glucosidase with Octyl-Beta-D-Thio-Glucoside [Oryza sativa Japonica Group],3GNR_A Crystal Structure of a Rice Os3BGlu6 Beta-Glucosidase with covalently bound 2-deoxy-2-fluoroglucoside to the catalytic nucleophile E396 [Oryza sativa Japonica Group]
3.42e-80 23 503 18 489
Rice Os3BGlu6 E178Q with Covalent Glucosyl Moiety from p-nitrophenyl glucopyranoside. [Oryza sativa Japonica Group]
3.42e-80 23 503 18 489
Rice Os3BGlu6 Beta-Glucosidase E178Q mutant in a covalent complex with Glc from GA4GE. [Oryza sativa Japonica Group]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
9.04e-85 23 502 21 480
Beta-glucosidase 42 OS=Arabidopsis thaliana OX=3702 GN=BGLU42 PE=2 SV=1
2.40e-84 23 504 25 497
Beta-glucosidase 25 OS=Oryza sativa subsp. japonica OX=39947 GN=BGLU25 PE=2 SV=2
2.23e-83 23 476 37 500
Beta-glucosidase 32 OS=Arabidopsis thaliana OX=3702 GN=BGLU32 PE=2 SV=2
3.37e-83 23 519 31 520
Beta-glucosidase 30 OS=Arabidopsis thaliana OX=3702 GN=BGLU30 PE=2 SV=1
1.29e-81 23 473 37 495
Beta-glucosidase 31 OS=Arabidopsis thaliana OX=3702 GN=BGLU31 PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.288663 0.711323 CS pos: 19-20. Pr: 0.4398

TMHMM  Annotations      download full data without filtering help

Start End
539 561