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CAZyme Information: ALNC14_054990:RNA-p1
You are here: Home > Sequence: ALNC14_054990:RNA-p1
Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Albugo laibachii | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Albuginaceae; Albugo; Albugo laibachii | |||||||||||
| CAZyme ID | ALNC14_054990:RNA-p1 | |||||||||||
| CAZy Family | GH18 | |||||||||||
| CAZyme Description | cellulose synthase 3 putative | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 2.4.1.12:3 |
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CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GT2 | 814 | 1081 | 6.1e-19 | 0.36426592797783935 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 133043 | CESA_CelA_like | 8.31e-56 | 541 | 881 | 1 | 234 | CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end. |
| 236918 | bcsA | 1.78e-32 | 493 | 885 | 231 | 496 | cellulose synthase catalytic subunit; Provisional |
| 224136 | BcsA | 2.37e-23 | 492 | 1035 | 9 | 430 | Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase [Cell motility]. |
| 276809 | TPR | 9.70e-23 | 1536 | 1628 | 5 | 97 | Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes. |
| 276809 | TPR | 3.21e-22 | 1156 | 1252 | 1 | 97 | Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 0.0 | 1 | 1714 | 1 | 1714 | |
| 0.0 | 1 | 1123 | 1 | 1124 | |
| 0.0 | 1 | 1123 | 1 | 1124 | |
| 0.0 | 1 | 1122 | 3 | 1125 | |
| 0.0 | 1 | 1123 | 1 | 1125 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.78e-90 | 1157 | 1711 | 5 | 540 | Chain E, Stress-induced-phosphoprotein 1 [Homo sapiens] |
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| 4.48e-33 | 1393 | 1572 | 5 | 179 | TPR2AB-domain:pHSP90-complex of yeast Sti1 [Saccharomyces cerevisiae S288C] |
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| 5.49e-27 | 528 | 968 | 258 | 577 | Chain A, Cellulose synthase catalytic subunit [UDP-forming] [Escherichia coli K-12] |
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| 5.40e-25 | 529 | 1012 | 116 | 499 | Chain A, Putative cellulose synthase [Cereibacter sphaeroides 2.4.1] |
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| 6.51e-25 | 529 | 1012 | 128 | 511 | Chain A, Cellulose Synthase Subunit A [Cereibacter sphaeroides] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.87e-96 | 1156 | 1711 | 4 | 540 | Stress-induced-phosphoprotein 1 OS=Xenopus laevis OX=8355 GN=stip1 PE=2 SV=1 |
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| 2.29e-91 | 1157 | 1711 | 5 | 540 | Stress-induced-phosphoprotein 1 OS=Bos taurus OX=9913 GN=STIP1 PE=2 SV=1 |
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| 7.83e-91 | 1157 | 1711 | 5 | 540 | Stress-induced-phosphoprotein 1 OS=Mus musculus OX=10090 GN=Stip1 PE=1 SV=1 |
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| 1.45e-90 | 1157 | 1711 | 5 | 540 | Stress-induced-phosphoprotein 1 OS=Rattus norvegicus OX=10116 GN=Stip1 PE=1 SV=1 |
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| 6.73e-90 | 1157 | 1711 | 5 | 540 | Stress-induced-phosphoprotein 1 OS=Macaca fascicularis OX=9541 GN=STIP1 PE=2 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 1.000021 | 0.000000 |
TMHMM Annotations download full data without filtering help
| Start | End |
|---|---|
| 5 | 27 |
| 34 | 56 |
| 66 | 88 |
| 90 | 107 |
| 122 | 141 |
| 153 | 175 |
| 209 | 231 |
| 418 | 440 |
| 491 | 513 |
| 919 | 938 |
| 953 | 975 |
| 1027 | 1049 |
| 1059 | 1081 |
| 1094 | 1116 |