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CAZyme Information: ALNC14_052160:RNA-p1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Albugo laibachii | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Albuginaceae; Albugo; Albugo laibachii | |||||||||||
| CAZyme ID | ALNC14_052160:RNA-p1 | |||||||||||
| CAZy Family | GH18 | |||||||||||
| CAZyme Description | endopolygalacturonase putative | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 3.2.1.15:80 |
|---|
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 5 | 262 | 4.3e-55 | 0.7323076923076923 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 395231 | Glyco_hydro_28 | 1.49e-58 | 3 | 262 | 48 | 309 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| 177865 | PLN02218 | 9.28e-22 | 6 | 275 | 156 | 427 | polygalacturonase ADPG |
| 215540 | PLN03010 | 3.40e-20 | 19 | 242 | 150 | 359 | polygalacturonase |
| 215120 | PLN02188 | 5.39e-17 | 91 | 244 | 204 | 361 | polygalacturonase/glycoside hydrolase family protein |
| 165802 | PLN02155 | 3.37e-15 | 18 | 262 | 124 | 369 | polygalacturonase |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 2.86e-205 | 1 | 277 | 1 | 277 | |
| 1.16e-97 | 1 | 273 | 1 | 276 | |
| 2.38e-60 | 3 | 259 | 10 | 268 | |
| 5.97e-59 | 1 | 270 | 103 | 373 | |
| 8.41e-59 | 1 | 270 | 103 | 373 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4.77e-55 | 3 | 273 | 69 | 337 | Polygalacturonase From Aspergillus Aculeatus [Aspergillus aculeatus],1IB4_A Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus],1IB4_B Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus] |
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| 1.88e-54 | 4 | 273 | 66 | 335 | Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_B Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_C Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_D Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_E Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_F Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_G Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini] |
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| 2.60e-52 | 3 | 272 | 73 | 341 | Chain A, Endo-polygalacturonase [Evansstolkia leycettana] |
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| 2.60e-52 | 3 | 272 | 73 | 341 | Chain A, endo-polygalacturonase [Evansstolkia leycettana] |
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| 5.93e-52 | 3 | 272 | 65 | 333 | Chain A, Endo-polygalacturonase [Evansstolkia leycettana] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.08e-55 | 1 | 260 | 101 | 364 | Probable endopolygalacturonase NFIA_008150 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=NFIA_008150 PE=3 SV=1 |
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| 1.53e-55 | 1 | 260 | 101 | 364 | Probable endopolygalacturonase AFUB_016610 OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=AFUB_016610 PE=3 SV=1 |
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| 1.53e-55 | 1 | 260 | 101 | 364 | Probable endopolygalacturonase AFUA_1G17220 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=AFUA_1G17220 PE=3 SV=1 |
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| 6.58e-54 | 3 | 273 | 108 | 376 | Endopolygalacturonase I OS=Aspergillus aculeatus OX=5053 GN=pgaI PE=1 SV=1 |
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| 3.46e-53 | 3 | 273 | 90 | 358 | Probable endopolygalacturonase B OS=Aspergillus kawachii OX=1069201 GN=pgaB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 1.000044 | 0.000003 |