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CAZyme Information: ALNC14_037790:RNA-p1

You are here: Home > Sequence: ALNC14_037790:RNA-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Albugo laibachii
Lineage Oomycota; NA; ; Albuginaceae; Albugo; Albugo laibachii
CAZyme ID ALNC14_037790:RNA-p1
CAZy Family CE5
CAZyme Description sporangia induced BardetBiedl syndrome 4 protein put
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
909 103772.61 5.2377
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_AlaibachiiNc14 14629 890382 180 14449
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in ALNC14_037790:RNA-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH5 199 473 1.2e-40 0.9530685920577617

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
225344 BglC 7.61e-27 139 511 19 398
Aryl-phospho-beta-D-glucosidase BglC, GH1 family [Carbohydrate transport and metabolism].
395098 Cellulase 5.95e-19 200 471 20 268
Cellulase (glycosyl hydrolase family 5).
276809 TPR 5.74e-17 586 681 2 97
Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.
274350 PEP_TPR_lipo 1.82e-16 541 808 251 518
putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
274350 PEP_TPR_lipo 3.52e-16 549 880 157 523
putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 1 909 1 909
2.83e-121 111 525 27 438
1.04e-110 97 502 10 410
2.82e-91 126 496 29 388
5.22e-91 131 496 5 362

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.86e-115 482 877 9 402
Subunits BBS 1,4,8,9,18 of the human BBSome complex [Homo sapiens]
3.92e-111 517 877 33 393
Structure of the bovine BBSome complex [Bos taurus],6VBV_4 Structure of the bovine BBSome:ARL6:GTP complex [Bos taurus],6VNW_E Cryo-EM structure of apo-BBSome [Bos taurus],6VOA_E Cryo-EM structure of the BBSome-ARL6 complex [Bos taurus]
2.37e-29 139 503 15 393
F229A/E292S Double Mutant of Exo-beta-1,3-glucanase from Candida albicans in Complex with Laminaritriose at 1.7 A [Candida albicans]
4.30e-29 139 503 15 393
F144Y/F258Y Double Mutant of Exo-beta-1,3-glucanase from Candida albicans at 2 A [Candida albicans]
5.34e-29 139 503 10 388
Exo-b-(1,3)-glucanase From Candida Albicans At 1.85 A Resolution [Candida albicans],1EQC_A Exo-b-(1,3)-glucanase From Candida Albicans In Complex With Castanospermine At 1.85 A [Candida albicans]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.57e-114 517 877 33 393
Bardet-Biedl syndrome 4 protein OS=Homo sapiens OX=9606 GN=BBS4 PE=1 SV=2
2.02e-110 517 877 33 393
Bardet-Biedl syndrome 4 protein homolog OS=Bos taurus OX=9913 GN=BBS4 PE=1 SV=1
6.22e-102 517 877 33 393
Bardet-Biedl syndrome 4 protein homolog OS=Mus musculus OX=10090 GN=Bbs4 PE=1 SV=1
3.36e-83 517 896 30 406
Bardet-Biedl syndrome 4 protein homolog OS=Xenopus tropicalis OX=8364 GN=bbs4 PE=2 SV=1
8.22e-59 520 864 37 399
Bardet-Biedl syndrome 4 protein homolog OS=Drosophila melanogaster OX=7227 GN=BBS4 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000039 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in ALNC14_037790:RNA-p1.