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CAZyme Information: ALNC14_032260:RNA-p1

You are here: Home > Sequence: ALNC14_032260:RNA-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Albugo laibachii
Lineage Oomycota; NA; ; Albuginaceae; Albugo; Albugo laibachii
CAZyme ID ALNC14_032260:RNA-p1
CAZy Family AA6
CAZyme Description conserved hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
562 63057.88 6.4771
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_AlaibachiiNc14 14629 890382 180 14449
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in ALNC14_032260:RNA-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH17 308 559 2.5e-24 0.9035369774919614

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
227625 Scw11 2.36e-22 242 555 22 304
Exo-beta-1,3-glucanase, GH17 family [Carbohydrate transport and metabolism].
381626 GH113_mannanase-like 0.002 426 511 171 263
Glycoside hydrolase family 113 beta-1,4-mannanase and similar proteins. Mannan endo-1,4-beta mannosidase (E.C 3.2.1.78) randomly cleaves (1->4)-beta-D-mannosidic linkages in mannans, galactomannans and glucomannans and is also called beta-1,4-mannanase, endo-1,4-beta-mannanase, endo-beta-1,4-mannase, beta-mannanase B, beta-1, 4-mannan 4-mannanohydrolase, endo-beta-mannanase, beta-D-mannanase, 1,4-beta-D-mannan mannanohydrolase, and 4-beta-D-mannan mannanohydrolase. (1->4)-beta-linked mannans are polysaccharides with a linear polymer backbone of (1->4)-beta-linked mannose units (in plants and fungi) or alternating mannose and glucose/galactose units (glucomannan in plants and fungi, and galactomannan and galactoglucomannan in plants), such as in the hemicellulose fraction of hard- and softwoods. Complete degradation of mannan requires a series of enzymes, including beta-1,4-mannanase. According to the CAZy database beta-1,4-mannanases are grouped into various glycoside hydrolase (GH) families; GH family 113 beta-1,4-mannanases include mostly bacterial and archaeal sequences.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 1 562 1 562
2.82e-47 271 559 20 308
7.98e-45 266 561 14 313
2.33e-42 274 561 23 306
3.90e-42 274 559 304 584

PDB Hits      help

ALNC14_032260:RNA-p1 has no PDB hit.

Swiss-Prot Hits      help

ALNC14_032260:RNA-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000379 0.999579 CS pos: 23-24. Pr: 0.9688

TMHMM  Annotations      help

There is no transmembrane helices in ALNC14_032260:RNA-p1.