CAZyme Information: AKAW_06248-t41_1-p1

Basic Information

• Species: Aspergillus luchuensis
• Lineage: Ascomycota; Eurotiomycetes; ; Aspergillaceae; Aspergillus; Aspergillus luchuensis
• CAZyme ID: AKAW_06248-t41_1-p1
• CAZy Family: GH28
• CAZyme Description: rhamnogalacturonase A precursor

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
459	DF126461|CGC1	49785.76	4.7126

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_AluchuensisIFO4308	11755	1033177	267	11488

• Gene Location: location=DF126461:765449-766940(-)

Full Sequence      

MRAIILPYILFLATLARAQLSGPVGPLVDYSTKARNQTCNIIDYGALADGKTDISQPLLD
AWGNCSVGGLVYIPPGNYSLAEDIELKHGQSSAIQLDGVIMRGHRGSYQMILIRDCNDFE
LFSGNSRGAIQGFGYEYLQNETYGERLLRIQEVSNFSVHGFALVDSPSYYIVFDTVSSGE
VYNILIRGVTSVGATDAIDVWGENMWFHDIEVSNGDECVTVKSPAHNYLIENIYCNLSGG
TAIGSLGTGTNISDIHYRNLYLNRADACFLKSNNGDGVVKNIIWENVIVHGGPYPLAIDE
AWGDDRGSVGVQVSNLTFRNWHGESASASRPVIRLQCDSDIPCYDITIDNVNLWANDTSY
VVWLCENAYGDGACLPSAKGTTDLKSFTSKQTITATPSYAAPTMAADFTSDLPSTSPFTI
PPMPTSFYPGATPISTLLHLHGAGGLPSASPVSHHQRQH

Enzyme Prediction     

EC	3.2.1.171:11

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH28	68	369	1.4e-50	0.9476923076923077

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
177865	PLN02218	1.02e-27	38	376	67	428	polygalacturonase ADPG
215540	PLN03010	3.25e-25	37	373	45	394	polygalacturonase
395231	Glyco_hydro_28	1.42e-19	146	374	86	321	Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
178580	PLN03003	1.50e-18	40	353	25	357	Probable polygalacturonase At3g15720
165802	PLN02155	2.99e-18	27	370	17	380	polygalacturonase

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
BCS13436.1|GH28	0.0	1	459	1	459
BCS01728.1|GH28	0.0	1	459	1	459
ABD61569.1|GH28	0.0	1	457	1	457
CAK48050.1|GH28	0.0	1	457	1	457
QMW30240.1|GH28	5.81e-250	15	446	16	447

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1RMG_A	1.77e-142	19	437	1	420	Rhamnogalacturonase A From Aspergillus Aculeatus [Aspergillus aculeatus]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|A2QLQ5|RHGC_ASPNC	0.0	1	457	1	457	Probable rhamnogalacturonase C OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rhgC PE=3 SV=1
sp|B8NGP8|RHGC_ASPFN	1.03e-250	15	446	16	447	Probable rhamnogalacturonase C OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=rhgC PE=3 SV=2
sp|Q2UFD2|RHGC_ASPOR	2.42e-249	15	446	16	447	Probable rhamnogalacturonase C OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rhgC PE=3 SV=1
sp|Q00001|RHGA_ASPAC	2.06e-142	1	437	1	438	Rhamnogalacturonase A OS=Aspergillus aculeatus OX=5053 GN=rhgA PE=1 SV=1
sp|A2QYE5|RHGA_ASPNC	1.01e-141	15	437	15	439	Probable rhamnogalacturonase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rhgA PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000206	0.999752	CS pos: 18-19. Pr: 0.9809

TMHMM  Annotations     

There is no transmembrane helices in AKAW_06248-t41_1-p1.