logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: AGR57_12504T0-p1

You are here: Home > Sequence: AGR57_12504T0-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phanerochaete chrysosporium
Lineage Basidiomycota; Agaricomycetes; ; Phanerochaetaceae; Phanerochaete; Phanerochaete chrysosporium
CAZyme ID AGR57_12504T0-p1
CAZy Family AA7
CAZyme Description Glycoside Hydrolase Family 28 / Carbohydrate-Binding Module Family 1 protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
511 53530.79 5.5924
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PchrysosporiumRP-78 13602 273507 0 13602
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.171:11

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 61 368 8.3e-52 0.9692307692307692

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
215426 PLN02793 3.21e-17 138 371 173 412
Probable polygalacturonase
215540 PLN03010 5.22e-15 39 358 48 378
polygalacturonase
177865 PLN02218 9.12e-15 31 368 61 418
polygalacturonase ADPG
395231 Glyco_hydro_28 4.54e-14 134 365 77 320
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
178580 PLN03003 3.30e-13 119 354 111 357
Probable polygalacturonase At3g15720

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
4.03e-213 7 436 11 441
1.98e-168 18 482 20 479
3.34e-154 16 441 15 445
1.36e-152 11 437 16 445
2.38e-152 15 428 15 432

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
9.15e-151 19 436 1 421
Rhamnogalacturonase A From Aspergillus Aculeatus [Aspergillus aculeatus]
9.14e-09 467 499 1 33
Chain A, Exoglucanase 1 [Trichoderma reesei]
3.20e-08 467 499 1 33
Chain A, CELLOBIOHYDROLASE I [Trichoderma reesei]
4.37e-08 467 499 1 33
Chain A, C-TERMINAL DOMAIN OF CELLOBIOHYDROLASE I [Trichoderma reesei],2CBH_A Chain A, C-TERMINAL DOMAIN OF CELLOBIOHYDROLASE I [Trichoderma reesei],2MWJ_A Chain A, Exoglucanase 1 [Trichoderma reesei],2MWK_A Chain A, Exoglucanase 1 [Trichoderma reesei],5X34_A Chain A, Exoglucanase 1 [Trichoderma reesei],5X35_A Chain A, Exoglucanase 1 [Trichoderma reesei],5X36_A Chain A, Exoglucanase 1 [Trichoderma reesei],5X37_A Chain A, Exoglucanase 1 [Trichoderma reesei],5X38_A Chain A, Exoglucanase 1 [Trichoderma reesei]
7.34e-07 467 499 1 33
Chain A, CELLOBIOHYDROLASE I [Trichoderma reesei],1AZH_A Chain A, CELLOBIOHYDROLASE I [Trichoderma reesei],5X3C_A Chain A, Exoglucanase 1 [Trichoderma reesei]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4.05e-152 3 437 1 441
Probable rhamnogalacturonase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rhgA PE=3 SV=1
1.33e-151 5 436 3 439
Rhamnogalacturonase A OS=Aspergillus aculeatus OX=5053 GN=rhgA PE=1 SV=1
6.57e-151 3 437 1 441
Rhamnogalacturonase A OS=Aspergillus niger OX=5061 GN=rhgA PE=1 SV=1
5.65e-146 6 435 7 443
Probable rhamnogalacturonase B OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=rhgB PE=3 SV=1
9.40e-146 6 435 7 443
Probable rhamnogalacturonase B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=rhgB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000224 0.999747 CS pos: 18-19. Pr: 0.9795

TMHMM  Annotations      help

There is no transmembrane helices in AGR57_12504T0-p1.