No AFmodels/IMGVR_UViG_3300001112_000001|3300001112|JGI12322J13274_100000173-plddt.txt found dbAPIS: a database of anti-prokaryotic immune systems

Seed protein information help

APIS family ID APIS343
Inhibited defense system
CLAN ID CLAN002
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
IMGVR_UViG_3300001112_000001|3300001112|JGI12322J13274_100000173
gene_page: 104 11443.7 6.3298 -0.5
Phage property
Phage Assembly id
PMID/References
PDB structures ;
Pfam domains PF26761
Phrog phrog_5749,phrog_3336,phrog_3869,phrog_4728,phrog_87
Host taxa
Gene Location Start: ;  End: ;  Strand: 
Description
Note This family does not have seed protein, but we infer its function is defending Type I CBASS because it belongs to the same clan as family APIS287,APIS361 which has seed protein.

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS343 IMGVR_UViG_3300001112_000001|3300001112|JGI12322J13274_100000173 3 HMM model Member alignment

Host Taxa distribution

Length distribution

Length Distribution Bar chart

Homology to other families       help

Clan ID: CLAN002

APIS343 has no similar APIS family.

Family members, sources, and their hosts        help

Results of representative protein blast against members.

Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
IMGVR_UViG_3300001112_000001|3300001112|JGI12322J13274_100000173 100.000 3.674E-65 211 1.000% IMGVR PF26761 phrog_5749 phrog_3336 phrog_3869 phrog_4728 phrog_87
IMGVR_UViG_3300022821_000014|3300022821|Ga0222673_100002894 80.500 1.667E-42 146 0.829% IMGVR PF26761 phrog_5749 phrog_3336 phrog_3869 phrog_4728 phrog_87
IMGVR_UViG_3300025348_000002|3300025348|Ga0208353_100001293 95.800 2.678E-65 212 0.990% IMGVR PF26761 phrog_5749 phrog_3336 phrog_3869 phrog_4728 phrog_87