Seed proteins |
Seed protein 3D structures |
Structural homologs |
Family infomation |
Homology to other families |
Family members, sources, and their hosts
Seed protein information help
| APIS family ID | APIS340 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN002 | |||||||||||||
| Seed protein property |
|
|||||||||||||
| Phage property |
|
|||||||||||||
| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF26761 | |||||||||||||
| Phrog | phrog_1762,phrog_1497,phrog_33,phrog_3830,phrog_257 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending Type I CBASS because it belongs to the same clan as family APIS287,APIS361 which has seed protein. | |||||||||||||
Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Download
help
Family information Download help
| Fam ID | Seed protein | Member count | Model | Alignment | APIS340 | IMGVR_UViG_3300046523_000205|3300046523|Ga0495644_0000042_40097_40531 | 3 | HMM model | Member alignment |
|---|
Host Taxa distribution
Length distribution
Family members, sources, and their hosts help
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300046523_000205|3300046523|Ga0495644_0000042_40097_40531 | 100.000 | 9.047E-99 | 310 | 1.000% | IMGVR | PF26761 | phrog_1762 phrog_1497 phrog_33 phrog_3830 phrog_257 | ||
| IMGVR_UViG_3300033550_000006|3300033550|Ga0247829_1000000844 | 65.900 | 2.412E-54 | 183 | 0.951% | IMGVR | PF26761 | phrog_1762 phrog_1497 phrog_33 phrog_3830 phrog_257 | ||
| IMGVR_UViG_3300042015_000154|3300042015|Ga0439462_0000003_5644_6084 | 57.700 | 5.063E-45 | 156 | 0.951% | IMGVR | PF26761 | phrog_1762 phrog_1497 phrog_33 phrog_3830 phrog_257 |