Seed proteins |
Seed protein 3D structures |
Structural homologs |
Family infomation |
Homology to other families |
Family members, sources, and their hosts
Seed protein information help
| APIS family ID | APIS338 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN002 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF26761 | |||||||||||||
| Phrog | phrog_4191,phrog_4286,phrog_8841,phrog_601,phrog_7507 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending Type I CBASS because it belongs to the same clan as family APIS287,APIS361 which has seed protein. | |||||||||||||
Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
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Family information Download help
| Fam ID | Seed protein | Member count | Model | Alignment | APIS338 | IMGVR_UViG_3300028666_000028|3300028666|Ga0265336_10000070144 | 5 | HMM model | Member alignment |
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Host Taxa distribution
Length distribution
Family members, sources, and their hosts help
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300028666_000028|3300028666|Ga0265336_10000070144 | 100.000 | 2.195E-55 | 182 | 1.000% | IMGVR | PF26761 | phrog_4191 phrog_4286 phrog_8841 phrog_601 phrog_7507 | ||
| IMGVR_UViG_3300048587_000675|3300048587|Ga0498925_0001821_48471_48734 | 49.700 | 6.653E-20 | 80 | 0.966% | IMGVR | PF26761 | phrog_4191 phrog_4286 phrog_8841 phrog_601 phrog_7507 | ||
| IMGVR_UViG_3300049215_000227|3300049215|Ga0495309_0000749_109892_110164 | 50.600 | 6.653E-20 | 80 | 0.943% | IMGVR | PF26761 | phrog_4191 phrog_4286 phrog_8841 phrog_601 phrog_7507 | ||
| IMGVR_UViG_3300024490_000001|3300024490|Ga0255185_100001192 | 51.900 | 2.180E-18 | 76 | 0.862% | IMGVR | PF26761 | phrog_4191 phrog_4286 phrog_8841 phrog_601 phrog_7507 | ||
| IMGVR_UViG_3300012943_000035|3300012943|Ga0164241_1000059054 | 52.000 | 3.831E-21 | 84 | 0.943% | IMGVR | PF26761 | phrog_4191 phrog_4286 phrog_8841 phrog_601 phrog_7507 |