Seed protein information help

APIS family ID APIS325
Inhibited defense system BREX type I
CLAN ID CLAN101
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
WZK98948.1 gene_page: orf46 62 7089.17 5.6244 -1
Phage property
Phage Assembly id
Escherichia phage Dru_SM1 GCA_038396275.1
PMID/References Ojima et al., 2024
PDB structures ;
Pfam domains
Phrog phrog_6005,phrog_8841,phrog_2331,phrog_6705,phrog_3171
Host taxa d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli
Gene Location Start: 33199;  End: 33387;  Strand: -
Description ORF46 exhibits anti-Brex type I activity, as a trimethylamine methyltransferase corrinoid protein.

Seed genomic context      Download table help

Genome accession Start End Strand Protein ID Length Molecular weight Charge Isoelectric point Function Phrog PFAM

Seed genomic context- JBrowse     

Predicted 3D structure by alphafold2 with pTM = 0.48 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

No homologs found in esmfold database

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS325 WZK98948.1 16 HMM model Member alignment

Host Taxa distribution

Length distribution

Length Distribution Bar chart

Homology to other families       help

Clan ID: CLAN101

APIS325 has no similar APIS family.

Family members, sources, and their hosts        help

Results of representative protein blast against members.

Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
MGV-GENOME-0328781_45 88.200 5.747E-33 116 1.000% MGV phrog_6005 phrog_8841 phrog_2331 phrog_6705 phrog_3171
PQ202980_00039 83.600 1.260E-30 109 1.000% Escherichia phage CSP1C Escherichia INPHARED phrog_6005 phrog_8841 phrog_2331 phrog_6705 phrog_3171
MZ501091_00044 89.000 2.220E-33 117 1.000% Escherichia phage KurtStettler Escherichia INPHARED phrog_6005 phrog_8841 phrog_2331 phrog_6705 phrog_3171
MZ501112_00043 84.900 2.581E-31 111 1.000% Escherichia phage WildeMaa Escherichia INPHARED phrog_6005 phrog_8841 phrog_2331 phrog_6705 phrog_3171
MK672798_00046 82.200 6.153E-30 108 1.000% Escherichia phage Skure Escherichia INPHARED phrog_6005 phrog_8841 phrog_2331 phrog_6705 phrog_3171
OL960573_00045 83.600 1.260E-30 109 1.000% Escherichia phage vB_EcoS_SA126VB Escherichia INPHARED phrog_6005 phrog_8841 phrog_2331 phrog_6705 phrog_3171
PP627280_00045 84.900 2.581E-31 111 1.000% Escherichia phage SHIN8 Escherichia INPHARED phrog_6005 phrog_8841 phrog_2331 phrog_6705 phrog_3171
uvig_190005_25 82.800 3.263E-30 108 1.000% GPD phrog_6005 phrog_8841 phrog_2331 phrog_6705 phrog_3171
uvig_291572_48 88.200 5.747E-33 116 1.000% GPD phrog_6005 phrog_8841 phrog_2331 phrog_6705 phrog_3171
WZK98948.1 100.000 6.248E-34 119 1.000% Escherichia phage Dru_SM1 Escherichia coli NCBI phrog_6005 phrog_8841 phrog_2331 phrog_6705 phrog_3171
MGV-GENOME-0332986_25 82.800 3.263E-30 108 1.000% MGV phrog_6005 phrog_8841 phrog_2331 phrog_6705 phrog_3171
OQ791410_00010 84.400 4.867E-31 111 1.000% Escherichia phage phiG7 Escherichia INPHARED phrog_6005 phrog_8841 phrog_2331 phrog_6705 phrog_3171
MZ501071_00043 83.300 1.730E-30 109 1.000% Escherichia phage GottfriedDienst Escherichia INPHARED phrog_6005 phrog_8841 phrog_2331 phrog_6705 phrog_3171
PP627279_00043 89.800 8.578E-34 119 1.000% Escherichia phage KS_A8 Escherichia INPHARED phrog_6005 phrog_8841 phrog_2331 phrog_6705 phrog_3171
OL539454_00043 82.200 6.153E-30 108 1.000% Escherichia phage vB_EcoS_OddieOddie Escherichia INPHARED phrog_6005 phrog_8841 phrog_2331 phrog_6705 phrog_3171
MZ501104_00044 83.000 2.376E-30 109 1.000% Escherichia phage SeppeHuegi Escherichia INPHARED phrog_6005 phrog_8841 phrog_2331 phrog_6705 phrog_3171