Seed protein information help

APIS family ID APIS307
Inhibited defense system hhe
CLAN ID CLAN099
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
WZK98970.1 gene_page: orf65 74 8600.61 4.3855 -4.5
Phage property
Phage Assembly id
Escherichia phage Dru_SM1 GCA_038396275.1
PMID/References Ojima et al., 2024
PDB structures ;
Pfam domains
Phrog phrog_1775,phrog_9228,phrog_778,phrog_9148,phrog_6435
Host taxa d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli
Gene Location Start: 46513;  End: 46737;  Strand: +
Description ORF65 shows anti-hhe activity, predicted as a transcriptional regulator protein (SplA).

Seed genomic context      Download table help

Genome accession Start End Strand Protein ID Length Molecular weight Charge Isoelectric point Function Phrog PFAM

Seed genomic context- JBrowse     

Predicted 3D structure by alphafold2 with pTM = 0.34 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

No homologs found in esmfold database

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS307 WZK98970.1 20 HMM model Member alignment

Host Taxa distribution

Length distribution

Length Distribution Bar chart

Homology to other families       help

Clan ID: CLAN099

APIS307 has no similar APIS family.

Family members, sources, and their hosts        help

Results of representative protein blast against members.

Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
IMGVR_UViG_3300045988_071012|3300045988|Ga0495776_016288_44897_45136 98.500 1.345E-46 156 1.000% IMGVR phrog_1775 phrog_9228 phrog_778 phrog_9148 phrog_6435
MZ501104_00062 97.800 3.477E-46 155 1.000% Escherichia phage SeppeHuegi Escherichia INPHARED phrog_1775 phrog_9228 phrog_778 phrog_9148 phrog_6435
LR025196_00049 97.100 8.987E-46 154 1.000% Escherichia phage vB_Eco_SLUR63 Escherichia INPHARED phrog_1775 phrog_9228 phrog_778 phrog_9148 phrog_6435
PQ202980_00058 98.500 1.345E-46 156 1.000% Escherichia phage CSP1C Escherichia INPHARED phrog_1775 phrog_9228 phrog_778 phrog_9148 phrog_6435
PP627282_00059 98.500 1.345E-46 156 1.000% Escherichia phage KS_S4 Escherichia INPHARED phrog_1775 phrog_9228 phrog_778 phrog_9148 phrog_6435
OL960575_00066 98.500 1.345E-46 156 1.000% Escherichia phage vB_EcoS_SA80RD Escherichia INPHARED phrog_1775 phrog_9228 phrog_778 phrog_9148 phrog_6435
KM236243_00059 96.900 1.233E-45 153 1.000% Escherichia phage Seurat Escherichia INPHARED phrog_1775 phrog_9228 phrog_778 phrog_9148 phrog_6435
MZ501112_00065 97.100 8.987E-46 154 1.000% Escherichia phage WildeMaa Escherichia INPHARED phrog_1775 phrog_9228 phrog_778 phrog_9148 phrog_6435
PP627280_00066 98.000 2.534E-46 155 1.000% Escherichia phage SHIN8 Escherichia INPHARED phrog_1775 phrog_9228 phrog_778 phrog_9148 phrog_6435
uvig_386062_3 89.300 2.071E-40 138 0.986% GPD phrog_1775 phrog_9228 phrog_778 phrog_9148 phrog_6435
MGV-GENOME-0328781_63 98.500 1.345E-46 156 1.000% MGV phrog_1775 phrog_9228 phrog_778 phrog_9148 phrog_6435
WZK98970.1 100.000 1.467E-47 159 1.000% Escherichia phage Dru_SM1 Escherichia coli NCBI phrog_1775 phrog_9228 phrog_778 phrog_9148 phrog_6435
LR025198_00007 97.600 4.772E-46 154 1.000% Escherichia phage vB_Eco_SLUR26 Escherichia INPHARED phrog_1775 phrog_9228 phrog_778 phrog_9148 phrog_6435
uvig_190005_45 90.500 4.252E-41 140 0.986% GPD phrog_1775 phrog_9228 phrog_778 phrog_9148 phrog_6435
uvig_594156_51 97.600 4.772E-46 154 1.000% GPD phrog_1775 phrog_9228 phrog_778 phrog_9148 phrog_6435
MZ501071_00061 94.800 2.130E-44 150 1.000% Escherichia phage GottfriedDienst Escherichia INPHARED phrog_1775 phrog_9228 phrog_778 phrog_9148 phrog_6435
MGV-GENOME-0332986_45 90.500 4.252E-41 140 0.986% MGV phrog_1775 phrog_9228 phrog_778 phrog_9148 phrog_6435
PP627279_00063 98.900 7.143E-47 157 1.000% Escherichia phage KS_A8 Escherichia INPHARED phrog_1775 phrog_9228 phrog_778 phrog_9148 phrog_6435
OR880647_00087 96.700 1.693E-45 153 1.000% Escherichia phage ECP2304 Escherichia INPHARED phrog_1775 phrog_9228 phrog_778 phrog_9148 phrog_6435
KP064094_00063 99.400 3.793E-47 158 1.000% Escherichia phage CAjan Escherichia INPHARED phrog_1775 phrog_9228 phrog_778 phrog_9148 phrog_6435