Seed proteins |
Seed protein 3D structures |
Structural homologs |
Family infomation |
Homology to other families |
Family members, sources, and their hosts
Seed protein information help
| APIS family ID | APIS301 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN002 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF26761 | |||||||||||||
| Phrog | phrog_1762,phrog_8470,phrog_8323,phrog_5313,phrog_907 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending Type I CBASS because it belongs to the same clan as family APIS287,APIS361 which has seed protein. | |||||||||||||
Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
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Family information Download help
| Fam ID | Seed protein | Member count | Model | Alignment | APIS301 | IMGVR_UViG_3300025875_000001|3300025875|Ga0210040_10000148136 | 4 | HMM model | Member alignment |
|---|
Host Taxa distribution
Length distribution
Family members, sources, and their hosts help
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300025875_000001|3300025875|Ga0210040_10000148136 | 100.000 | 4.214E-59 | 193 | 1.000% | IMGVR | PF26761 | phrog_1762 phrog_8470 phrog_8323 phrog_5313 phrog_907 | ||
| IMGVR_UViG_3300005434_000008|3300005434|Ga0070709_1000004586 | 55.500 | 3.443E-24 | 93 | 0.914% | IMGVR | PF26761 | phrog_1762 phrog_8470 phrog_8323 phrog_5313 phrog_907 | ||
| IMGVR_UViG_3300025898_000003|3300025898|Ga0207692_10000014109 | 55.500 | 3.443E-24 | 93 | 0.914% | IMGVR | PF26761 | phrog_1762 phrog_8470 phrog_8323 phrog_5313 phrog_907 | ||
| IMGVR_UViG_3300050821_008845|3300050821|Ga0505706_00144583_7216_7491 | 50.000 | 2.080E-18 | 76 | 0.849% | IMGVR | PF26761 | phrog_1762 phrog_8470 phrog_8323 phrog_5313 phrog_907 |