Seed proteins |
Seed protein 3D structures |
Structural homologs |
Family infomation |
Homology to other families |
Family members, sources, and their hosts
Seed protein information help
| APIS family ID | APIS298 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN012 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF10686 | |||||||||||||
| Phrog | phrog_1216,phrog_2439,phrog_256,phrog_7187,phrog_4740 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending AVAST type III because it belongs to the same clan as family APIS354 which has seed protein. | |||||||||||||
Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
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Family information Download help
| Fam ID | Seed protein | Member count | Model | Alignment | APIS298 | IMGVR_UViG_3300017722_002988|3300017722|Ga0181347_100000376 | 3 | HMM model | Member alignment |
|---|
Host Taxa distribution
Length distribution
Family members, sources, and their hosts help
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300017722_002988|3300017722|Ga0181347_100000376 | 100.000 | 2.947E-100 | 315 | 1.000% | IMGVR | PF10686 | phrog_1216 phrog_2439 phrog_256 phrog_7187 phrog_4740 | ||
| IMGVR_UViG_3300042310_000736|3300042310|Ga0453173_0000554_2278_2637 | 100.000 | 1.699E-77 | 249 | 0.793% | IMGVR | PF10686 | phrog_1216 phrog_2439 phrog_256 phrog_7187 phrog_4740 | ||
| IMGVR_UViG_3300043119_000655|3300043119|Ga0484790_000771_2381_2818 | 95.700 | 5.446E-93 | 294 | 1.000% | IMGVR | PF10686 | phrog_1216 phrog_2439 phrog_256 phrog_7187 phrog_4740 |