Seed protein information help

APIS family ID APIS297
Inhibited defense system Zorya type I,RADAR,Hypnos,Druantia type I
CLAN ID CLAN098
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
YP_002456012.1 gene_page: Bdi1 73 8482.83 6.296 0
Phage property
Phage Assembly id
Pseudomonas phage PB1 GCF_000883535.1
PMID/References PMID:40639337
PDB structures ;
Pfam domains
Phrog phrog_6651,phrog_7507,phrog_601,phrog_384,phrog_8420
Host taxa d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas aeruginosa
Gene Location Start: 62042;  End: 62263;  Strand: -
Description Bdi1 and Bdi2 function as multipurpose anti-defense proteins capable of inhibiting four defense systems.

Seed genomic context      Download table help

Genome accession Start End Strand Protein ID Length Molecular weight Charge Isoelectric point Function Phrog PFAM

Seed genomic context- JBrowse     

Predicted 3D structure by alphafold2 with pTM = 0.38 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

No homologs found in esmfold database

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS297 YP_002456012.1 42 HMM model Member alignment

Host Taxa distribution

Length distribution

Length Distribution Bar chart

Homology to other families       help

Clan ID: CLAN098

APIS297 has no similar APIS family.

Family members, sources, and their hosts        help

Results of representative protein blast against members.

Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
MK837009_00006 62.800 1.987E-25 95 1.000% Pseudomonas virus Pa193 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
MT491204_00077 92.400 2.781E-44 149 1.000% Pseudomonas phage vB_PaeM_USP_1 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
MN871508_00056 96.000 2.026E-44 150 1.000% Pseudomonas phage pasz2 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
PP977455_00078 98.500 6.228E-46 154 1.000% Pseudomonas phage vB_PaeM_1662 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
YP_002456012.1 100.000 4.949E-47 157 1.000% Pseudomonas phage PB1 Pseudomonas aeruginosa NCBI phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
PQ521333_00080 98.800 4.538E-46 154 1.000% Pseudomonas phage vB_PaeM_1658 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
PQ521329_00079 99.700 1.279E-46 156 1.000% Pseudomonas phage vB_PaeM_1384 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
OP310981_00038 98.300 8.547E-46 154 1.000% Pseudomonas phage Kara-mokiny kep-wari Wadjak 15 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
MT118299_00051 93.900 3.032E-45 152 1.000% Pseudomonas phage Epa25 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
PQ093905_00038 93.900 3.032E-45 152 1.000% Pseudomonas phage phi9_PA11 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
MT119368_00080 98.100 1.173E-45 153 1.000% Pseudomonas phage shane Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
MT118289_00032 98.300 8.547E-46 154 1.000% Pseudomonas phage Epa7 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
MK837010_00006 96.900 5.711E-45 151 1.000% Pseudomonas phage Pa204 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
PP740688_00003 93.100 1.076E-44 151 1.000% Pseudomonas phage vB_Pae_SG_WM_Sew_P23 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
PQ567101_00080 99.200 2.409E-46 155 1.000% Pseudomonas phage HHBS42_2 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
PP931176_00079 93.900 3.032E-45 152 1.000% Pseudomonas phage PADD Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
OR962153_00005 92.000 5.238E-44 149 1.000% Pseudomonas phage vB_PaeM_SIIA-P1 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
PQ149445_00053 72.700 5.299E-33 117 1.000% Pseudomonas phage BL7 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
PQ474312_00039 97.100 4.161E-45 152 1.000% Pseudomonas phage T35 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
PP977458_00080 86.600 8.813E-39 134 1.000% Pseudomonas phage vB_PaeM_4005 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
ON857942_00091 98.800 4.538E-46 154 1.000% Pseudomonas phage vB_PaeM_FBPa21 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
PP977457_00081 97.900 3.816E-44 149 0.973% Pseudomonas phage vB_PaeM_4003 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
PQ474311_00055 98.300 8.547E-46 154 1.000% Pseudomonas phage T34 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
PQ287652_00080 98.300 8.547E-46 154 1.000% Pseudomonas phage HHBS12_2 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
OR733708_00042 85.400 4.294E-38 132 1.000% Pseudomonas phage BL2 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
PP408255_00036 83.100 1.020E-36 128 1.000% Pseudomonas phage vB_Pa-PAC8 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
PP408250_00053 82.200 3.623E-36 126 1.000% Pseudomonas phage vB_Pa-PAC3 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
OR805296_00077 97.600 2.209E-45 153 1.000% Pseudomonas phage Victoria Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
MN871454_00053 85.200 5.895E-38 131 1.000% Pseudomonas phage Pa-A Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
PQ488730_00059 87.700 1.809E-39 136 1.000% Pseudomonas phage vB_PaeM_PB1661 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
MT133563_00028 81.700 6.827E-36 125 1.000% Pseudomonas phage billy Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
PP314035_00005 86.300 1.210E-38 133 1.000% Pseudomonas phage ISPAA97 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
MT119375_00078 86.300 1.210E-38 133 1.000% Pseudomonas phage chumba Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
MT118303_00053 81.900 1.883E-32 115 0.918% Pseudomonas phage Epa39 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
MT119374_00079 82.900 1.400E-36 127 1.000% Pseudomonas phage antinowhere Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
MT119372_00023 82.000 4.973E-36 126 1.000% Pseudomonas phage cory Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
MT118291_00038 95.800 2.781E-44 149 1.000% Pseudomonas phage Epa12 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
MW406974_00005 98.100 1.173E-45 153 1.000% Pseudomonas phage TH15 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
AB560486_00080 98.100 1.173E-45 153 1.000% Pseudomonas phage KPP12 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
PQ149444_00054 85.400 4.294E-38 132 1.000% Pseudomonas phage BL6 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
MW526258_00052 99.500 1.756E-46 156 1.000% Pseudomonas phage PhL_UNISO_PA-DSM_ph0031 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420
ON529291_00066 86.600 8.813E-39 134 1.000% Pseudomonas phage Ka2 Pseudomonas INPHARED phrog_6651 phrog_7507 phrog_601 phrog_384 phrog_8420