Seed protein information help

APIS family ID APIS292
Inhibited defense system Lon-mediated antiviral defense
CLAN ID CLAN096
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
YP_009224696.1 gene_page: dap1 134 15303.5 4.9495 -3
Phage property
Phage Assembly id
Pseudomonas phage PaoP5 GCF_001551785.1
PMID/References PMID:38886583
PDB structures ;
Pfam domains
Phrog phrog_1762,phrog_3141,phrog_6444,phrog_2488,phrog_296
Host taxa d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas aeruginosa
Gene Location Start: 764;  End: 1168;  Strand: -
Description Dap1 directly binds to phage HNH endonuclease, prohibiting host Lon-mediated HNH degradation and promoting phage genome packaging.

Seed genomic context      Download table help

Genome accession Start End Strand Protein ID Length Molecular weight Charge Isoelectric point Function Phrog PFAM

Seed genomic context- JBrowse     

Predicted 3D structure by alphafold2 with pTM = 0.3 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

No homologs found in esmfold database

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS292 YP_009224696.1 31 HMM model Member alignment

Host Taxa distribution

Length distribution

Length Distribution Bar chart

Homology to other families       help

Clan ID: CLAN096

APIS292 has no similar APIS family.

Family members, sources, and their hosts        help

Results of representative protein blast against members.

Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
OQ225163_00092 90.900 5.864E-79 253 0.985% Pseudomonas phage vB_PaeM_B31 Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
KY073228_00003 99.100 2.213E-89 283 1.000% Pseudomonas phage Zigelbrucke Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
PP836136_00182 91.600 8.815E-80 255 0.985% Pseudomonas phage GEC_PNG3 Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
OQ225162_00145 90.600 1.103E-78 252 0.985% Pseudomonas phage vB_PaeS_B8 Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
MN871481_00013 90.700 8.041E-79 252 0.985% Pseudomonas phage PaSz-1_45_92k Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
KU761955_00181 98.400 1.472E-88 280 1.000% Pseudomonas phage phiMK Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
PP836135_00185 98.900 4.162E-89 282 1.000% Pseudomonas phage GEC_MRC Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
OQ210008_00120 98.600 7.826E-89 281 1.000% Pseudomonas phage JS Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
PQ287651_00115 96.500 1.679E-86 274 1.000% Pseudomonas phage HHBS18_1 Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
OQ210007_00126 91.500 5.139E-81 259 1.000% Pseudomonas phage MK Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
MK443264_00007 91.800 6.428E-80 256 0.985% Pseudomonas phage ITTPL Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
YP_009224696.1 100.000 3.328E-90 285 1.000% Pseudomonas phage PaoP5 Pseudomonas aeruginosa NCBI phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
PP712940_00116 94.000 9.288E-84 267 1.000% Pseudomonas phage JG005 Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
PQ429081_00127 90.600 1.103E-78 252 0.985% Pseudomonas phage vB_VIPPAEUMC02a Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
MH791408_00160 98.400 1.472E-88 280 1.000% Pseudomonas phage PaZq-1 Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
OR211677_00005 95.000 7.426E-85 270 1.000% Pseudomonas phage vB_PaM_EPA3 Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
OP756059_00065 95.800 1.117E-85 272 1.000% Pseudomonas phage PseuPha1 Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
OM870969_00126 98.400 1.472E-88 280 1.000% Pseudomonas phage vB_Paer_PsCh Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
OQ992554_00097 97.100 3.462E-87 276 1.000% Pseudomonas phage Kat Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
MH370478_00179 98.100 2.768E-88 280 1.000% Pseudomonas phage SRT6 Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
OQ850183_00004 98.100 2.768E-88 280 1.000% Pseudomonas phage PT07 Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
OQ411628_00156 96.000 5.937E-86 273 1.000% Pseudomonas phage vB_PaeM_PS3 Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
PP766723_00075 98.000 3.796E-88 279 1.000% Pseudomonas phage Baskent_P3_3B Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
OQ921398_00157 96.700 1.224E-86 275 1.000% Pseudomonas phage vFB297 Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
OP875101_00060 95.300 3.949E-85 271 1.000% Pseudomonas phage SPA05 Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
MK224498_00076 98.600 7.826E-89 281 1.000% Pseudomonas phage Henu5 Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
IMGVR_UViG_651703076_000001|651703076|651708397 67.300 1.740E-52 177 0.970% IMGVR phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
MK138526_00101 67.600 9.249E-53 177 0.970% Pseudomonas phage vB_PaeM_LCK69 Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
KC862297_00129 67.300 1.740E-52 177 0.970% Pseudomonas phage PAK_P1 Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
PP541513_00157 45.300 2.364E-28 107 0.955% Pseudomonas phage IQPL Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296
OP875100_00175 46.900 2.081E-30 113 0.955% Pseudomonas phage SPA01 Pseudomonas INPHARED phrog_1762 phrog_3141 phrog_6444 phrog_2488 phrog_296