Seed protein information help

APIS family ID APIS286
Inhibited defense system Kongming
CLAN ID CLAN021
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
QQO38522.1 gene_page: VPG01_164 212 24338.7 4.3356 -13.5
Phage property
Phage Assembly id
Vibrio phage VPG01 GCA_024499575.1
PMID/References PMID:39977546
PDB structures ;
Pfam domains PF26880, PF26880
Phrog phrog_2234,phrog_2885,phrog_205,phrog_971,phrog_877
Host taxa d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;
Gene Location Start: 116438;  End: 117076;  Strand: -
Description The protein robustly suppressed cell death triggered by Kongming and their respective DNKs, indicating anti-Kongming function.

Seed genomic context      Download table help

Genome accession Start End Strand Protein ID Length Molecular weight Charge Isoelectric point Function Phrog PFAM

Seed genomic context- JBrowse     

Predicted 3D structure by alphafold2 with pTM = 0.81 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

No homologs found in esmfold database

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS286 QQO38522.1 52 HMM model Member alignment

Host Taxa distribution

Length distribution

Length Distribution Bar chart

Homology to other families       help

Clan ID: CLAN021

APIS286 has no similar APIS family.

Family members, sources, and their hosts        help

Results of representative protein blast against members.

Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
IMGVR_UViG_3300036546_000024|3300036546|Ga0377192_000893_16559_17185 39.900 3.888E-34 128 0.858% IMGVR PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
IMGVR_UViG_3300020047_005177|3300020047|Ga0206650_100008325 45.900 1.140E-37 138 0.769% IMGVR PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
KY883655_00120 51.900 5.425E-61 205 0.986% Vibrio phage JSF12 Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
KP280063_00001 51.700 1.018E-60 205 0.986% Vibrio phage phi 3 Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
IMGVR_UViG_3300036944_000747|3300036944|Ga0377190_001734_7028_7660 37.700 6.662E-28 109 0.792% IMGVR PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
IMGVR_UViG_3300036546_000103|3300036546|Ga0377192_000331_6405_7037 37.900 3.574E-28 110 0.792% IMGVR PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
OZ196067_00189 51.100 2.417E-53 183 0.892% Vibrio phage D243 Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
MW824426_00085 50.500 1.593E-52 181 0.892% Vibrio phage 70E37.6 Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
MW824423_00003 51.100 2.417E-53 183 0.892% Vibrio phage 70E35.5a Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
MW824416_00183 51.100 2.417E-53 183 0.892% Vibrio phage 234P7B Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
AP014889_00181 50.800 1.603E-46 164 0.792% Vibrio phage VCPH Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
OZ196862_00189 50.600 1.164E-52 181 0.892% Vibrio phage 70E37-3 Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
OZ196642_00197 58.600 2.164E-55 189 0.778% Vibrio phage D51 Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
OZ196494_00188 50.600 1.164E-52 181 0.892% Vibrio phage D213 Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
MN871511_00144 49.700 6.241E-50 173 0.877% Vibrio phage vspsw1 Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
MT442039_00163 49.900 3.329E-50 174 0.877% Vibrio phage vB_ValS_X1 Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
MH645904_00172 49.600 8.544E-50 173 0.877% Vibrio phage vB_VpS_PG07 Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
PP712102_00011 49.700 6.241E-50 173 0.877% Vibrio phage VB_Vhy_SJ1 Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
MG676225_00174 47.100 2.187E-43 154 0.835% Aeromonas phage AhSzw-1 Aeromonas INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
MG676224_00165 48.000 5.065E-45 159 0.840% Aeromonas phage AhSzq-1 Aeromonas INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
OP820700_00001 46.600 2.964E-40 145 0.797% Aeromonas phage vB_AdhS_TS3 Aeromonas INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
MK318083_00188 47.300 2.414E-41 149 0.797% Aeromonas phage Akh-2 Aeromonas INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
IMGVR_UViG_2974570554_000001|2974570554|2974570567 91.800 1.280E-131 409 1.000% IMGVR PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
MG649967_00011 91.800 1.280E-131 409 1.000% Vibrio phage Thalassa Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
MG649966_00015 90.800 7.722E-130 404 1.000% Vibrio phage Ceto Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
QQO38522.1 100.000 1.131E-143 444 1.000% Vibrio phage VPG01 Vibrio NCBI PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
OQ095919_00014 89.800 3.399E-128 399 1.000% Vibrio phage Noelle Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
OQ095918_00015 90.900 5.634E-130 404 1.000% Vibrio phage Kronos Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
OQ095917_00011 92.300 1.929E-132 411 1.000% Vibrio phage Javier Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
KT345706_00092 91.900 9.336E-132 409 1.000% Vibrio phage vB_VorS-PVo5 Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
OQ095916_00011 91.400 6.194E-131 407 1.000% Vibrio phage Chloris Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
LC487410_00001 94.500 1.364E-135 421 0.995% Vibrio phage KIT04 Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
OQ095915_00013 91.600 3.297E-131 408 1.000% Vibrio phage Wyman Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
MK907780_00012 92.300 1.929E-132 411 1.000% Vibrio phage Pontus Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
MT460517_00013 91.700 1.754E-131 409 1.000% Vibrio phage Athena Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
MK895508_00005 91.300 8.491E-131 407 1.000% Vibrio phage Brizo Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
MT460518_00015 90.000 1.809E-128 400 1.000% Vibrio phage Direpillow8 Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
MW344054_00014 91.200 1.596E-130 406 1.000% Vibrio phage Gary Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
MT460514_00011 92.200 2.644E-132 411 1.000% Vibrio phage AG74 Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
MT448617_00013 93.100 8.234E-134 415 1.000% Vibrio phage River4 Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
OQ106917_00012 89.600 8.755E-128 398 1.000% Vibrio phage IW18 Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
JQ340389_00156 98.600 1.550E-143 443 1.000% Vibrio phage pVp-1 Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
PQ768828_00012 92.300 1.929E-132 411 1.000% Vibrio phage Luma Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
IMGVR_UViG_2974783366_000001|2974783366|2974783378 92.200 2.644E-132 411 1.000% IMGVR PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
MW344055_00013 92.000 6.811E-132 410 1.000% Vibrio phage GRLPWR Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
PQ768827_00013 91.500 4.519E-131 407 1.000% Vibrio phage Hades Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
IMGVR_UViG_2974783807_000001|2974783807|2974783820 90.900 5.634E-130 404 1.000% IMGVR PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
IMGVR_UViG_2974784236_000001|2974784236|2974784250 89.500 1.645E-127 397 1.000% IMGVR PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
IMGVR_UViG_2974784456_000001|2974784456|2974784471 92.300 1.929E-132 411 1.000% IMGVR PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
IMGVR_UViG_2974784677_000001|2974784677|2974784691 91.200 1.596E-130 406 1.000% IMGVR PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
OQ079156_00014 89.500 1.645E-127 397 1.000% Vibrio phage Rocket24 Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877
LC811684_00001 97.400 2.410E-141 437 1.000% Vibrio phage VF16 Vibrio INPHARED PF26880 phrog_2234 phrog_2885 phrog_205 phrog_971 phrog_877