Seed protein information help

APIS family ID APIS282
Inhibited defense system Septu
CLAN ID CLAN095
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
AUR84964.1 gene_page: svarog 50 5766.13 7.9858 1
Phage property
Phage Assembly id
Vibrio phage 1.066.O._10N.286.46.E8 MG592443.1
PMID/References Lopatina et al., 2024
PDB structures ;
Pfam domains
Phrog phrog_9306,phrog_3287,phrog_677,phrog_6435,phrog_380
Host taxa d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio lentus
Gene Location Start: ;  End: ;  Strand: 
Description Anti-Septu phage protein; functionally suppresses Septu defense, likely by interfering with the PtuAB effector module or its activation.

Predicted 3D structure by alphafold2 with pTM = 0.66 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

No homologs found in esmfold database

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS282 AUR84964.1 5 HMM model Member alignment

Host Taxa distribution

Length distribution

Length Distribution Bar chart

Homology to other families       help

Clan ID: CLAN095

APIS282 has no similar APIS family.

Family members, sources, and their hosts        help

Results of representative protein blast against members.

Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
MG592661_00003 87.400 3.038E-25 93 1.000% Vibrio phage 2.044.O._10N.261.51.B8 Vibrio INPHARED phrog_9306 phrog_3287 phrog_677 phrog_6435 phrog_380
AUR84964.1 100.000 5.765E-29 104 1.000% Vibrio phage 1.066.O._10N.286.46.E8 Vibrio lentus NCBI phrog_9306 phrog_3287 phrog_677 phrog_6435 phrog_380
IMGVR_UViG_3300037010_001286|3300037010|Ga0373635_0000286_81459_81611 75.300 4.243E-17 70 0.880% IMGVR phrog_9306 phrog_3287 phrog_677 phrog_6435 phrog_380
IMGVR_UViG_3300035492_000045|3300035492|Ga0376445_000452_24390_24554 73.300 7.450E-16 66 0.860% IMGVR phrog_9306 phrog_3287 phrog_677 phrog_6435 phrog_380
IMGVR_UViG_3300035491_000062|3300035491|Ga0376444_001644_2604_2771 72.600 1.310E-14 63 0.820% IMGVR phrog_9306 phrog_3287 phrog_677 phrog_6435 phrog_380