Seed proteins |
Seed protein 3D structures |
Structural homologs |
Family infomation |
Homology to other families |
Family members, sources, and their hosts
Seed protein information help
| APIS family ID | APIS274 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN013 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF10076 | |||||||||||||
| Phrog | phrog_4372,phrog_5218,phrog_684,phrog_5313,phrog_551 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending AbiU because it belongs to the same clan as family APIS213 which has seed protein. | |||||||||||||
Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
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Family information Download help
| Fam ID | Seed protein | Member count | Model | Alignment | APIS274 | IMGVR_UViG_2648501787_000011|2648501787|2651263021 | 4 | HMM model | Member alignment |
|---|
Host Taxa distribution
Length distribution
Family members, sources, and their hosts help
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_2648501787_000011|2648501787|2651263021 | 100.000 | 7.148E-219 | 667 | 1.000% | Escherichia coli | IMGVR | PF10076 | phrog_4372 phrog_5218 phrog_684 phrog_5313 phrog_551 | |
| IMGVR_UViG_2585427793_000015|2585427793|2586735657 | 96.100 | 2.588E-215 | 657 | 1.000% | Escherichia coli | IMGVR | PF10076 | phrog_4372 phrog_5218 phrog_684 phrog_5313 phrog_551 | |
| uvig_330734_45 | 95.600 | 6.049E-214 | 653 | 1.000% | GPD | PF10076 | phrog_4372 phrog_5218 phrog_684 phrog_5313 phrog_551 | ||
| IMGVR_UViG_2671180921_000022|2671180921|2674749336 | 83.900 | 9.623E-183 | 563 | 1.000% | Escherichia coli | IMGVR | PF10076 | phrog_4372 phrog_5218 phrog_684 phrog_5313 phrog_551 |