Seed protein information help

APIS family ID APIS269
Inhibited defense system Class 1 OLD nucleases
CLAN ID CLAN094
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
QVW06719.1 gene_page: oad1 164 19050.4 4.5343 -9
Phage property
Phage Assembly id
Vibrio phage ICP1 GCA_020494455.1
PMID/References PMID:39829814
PDB structures ;
Pfam domains
Phrog phrog_4201,phrog_1497,phrog_1538,phrog_3940,phrog_1098
Host taxa d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae
Gene Location Start: 118079;  End: 118573;  Strand: +
Description OLD anti-defense 1 (Oad1) is a direct inhibitor of Vibrio cholerae-encoded Class 1 OLD family nuclease.

Seed genomic context      Download table help

Genome accession Start End Strand Protein ID Length Molecular weight Charge Isoelectric point Function Phrog PFAM

Seed genomic context- JBrowse     

Predicted 3D structure by alphafold2 with pTM = 0.22 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

No homologs found in esmfold database

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS269 QVW06719.1 10 HMM model Member alignment

Host Taxa distribution

Length distribution

Length Distribution Bar chart

Homology to other families       help

Clan ID: CLAN094

APIS269 has no similar APIS family.

Family members, sources, and their hosts        help

Results of representative protein blast against members.

Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
IMGVR_UViG_3300045988_105652|3300045988|Ga0495776_034391_108271_108837 91.900 8.054E-101 317 1.000% Vibrio IMGVR phrog_4201 phrog_1497 phrog_1538 phrog_3940 phrog_1098
MZ292654_00193 91.900 8.054E-101 317 1.000% Vibrio phage ICP1 Vibrio INPHARED phrog_4201 phrog_1497 phrog_1538 phrog_3940 phrog_1098
MW794190_00201 91.900 8.054E-101 317 1.000% Vibrio phage ICP1 Vibrio INPHARED phrog_4201 phrog_1497 phrog_1538 phrog_3940 phrog_1098
MW794150_00193 92.400 1.662E-101 319 1.000% Vibrio phage ICP1 Vibrio INPHARED phrog_4201 phrog_1497 phrog_1538 phrog_3940 phrog_1098
MGV-GENOME-0372901_183 91.900 8.054E-101 317 1.000% Vibrio MGV phrog_4201 phrog_1497 phrog_1538 phrog_3940 phrog_1098
KY065147_00144 92.100 4.284E-101 318 1.000% Vibrio phage JSF4 Vibrio INPHARED phrog_4201 phrog_1497 phrog_1538 phrog_3940 phrog_1098
QVW06719.1 100.000 6.225E-105 329 1.000% Vibrio phage ICP1 Vibrio cholerae NCBI phrog_4201 phrog_1497 phrog_1538 phrog_3940 phrog_1098
OR420688_00201 92.400 1.662E-101 319 1.000% Vibrio phage VRU Vibrio INPHARED phrog_4201 phrog_1497 phrog_1538 phrog_3940 phrog_1098
MN402506_00129 92.700 6.449E-102 321 1.000% Vibrio phage VMJ710 Vibrio INPHARED phrog_4201 phrog_1497 phrog_1538 phrog_3940 phrog_1098
HQ641353_00199 91.900 8.054E-101 317 1.000% Vibrio phage ICP1_2001_A Vibrio INPHARED phrog_4201 phrog_1497 phrog_1538 phrog_3940 phrog_1098