dbAPIS: a database of anti-prokaryotic immune systems

Seed protein information help

APIS family ID

APIS260

Inhibited defense system

CLAN ID

CLAN002

Seed protein property

Accession ID	Gene name	Protein length	Molecular weight	Isoelectric point	Charge
IMGVR_UViG_3300033148_004627\|3300033148\|Ga0366832_100196437	gene_page:	87	9515.67	6.9563	1.5

Phage property

Phage	Assembly id

PMID/References

PDB structures

;

Pfam domains

PF26761

Phrog

phrog_6162,phrog_8841,phrog_1068,phrog_958,phrog_2631

Host taxa

Gene Location

Start: ; End: ; Strand:

Description

Note

This family does not have seed protein, but we infer its function is defending Type I CBASS because it belongs to the same clan as family APIS287,APIS361 which has seed protein.

Full Sequence

90 < plddt <=100 ;

70 < plddt <= 90 ;

50 < plddt <= 70 ;

0 <= plddt <= 50 ; Download help

Family information Download help

Fam ID	Seed protein	Member count	Model	Alignment
APIS260	IMGVR_UViG_3300033148_004627\|3300033148\|Ga0366832_100196437	10	HMM model	Member alignment

Host Taxa distribution

Length distribution

Homology to other families help

Clan ID: CLAN002

APIS260 has no similar APIS family.

Family members, sources, and their hosts help

Results of representative protein blast against members.

Member	pident	evalue	bitscore	qcovs	SourceDB	Pfam	Phrog
IMGVR_UViG_3300033148_004627\|3300033148\|Ga0366832_100196437	100.000	1.392E-57	188	1.000%	IMGVR	PF26761	phrog_6162 phrog_8841 phrog_1068 phrog_958 phrog_2631
IMGVR_UViG_3300005288_000199\|3300005288\|Ga0065714_1006588512	64.400	6.745E-24	92	0.805%	IMGVR	PF26761	phrog_6162 phrog_8841 phrog_1068 phrog_958 phrog_2631
IMGVR_UViG_3300005434_000001\|3300005434\|Ga0070709_1000004019	58.400	4.845E-20	81	0.793%	IMGVR	PF26761	phrog_6162 phrog_8841 phrog_1068 phrog_958 phrog_2631
IMGVR_UViG_3300037193_002472\|3300037193\|Ga0226660_0018677_1945_2172	53.000	2.545E-16	70	0.770%	IMGVR	PF26761	phrog_6162 phrog_8841 phrog_1068 phrog_958 phrog_2631
IMGVR_UViG_3300031539_000018\|3300031539\|Ga0307380_1000040527	60.400	1.272E-23	91	0.862%	IMGVR	PF26761	phrog_6162 phrog_8841 phrog_1068 phrog_958 phrog_2631
IMGVR_UViG_3300031566_000161\|3300031566\|Ga0307378_1000144535	59.700	3.292E-23	90	0.862%	IMGVR	PF26761	phrog_6162 phrog_8841 phrog_1068 phrog_958 phrog_2631
IMGVR_UViG_3300032288_002651\|3300032288\|Ga0335290_103648515	50.200	9.056E-16	68	0.805%	IMGVR	PF26761	phrog_6162 phrog_8841 phrog_1068 phrog_958 phrog_2631
IMGVR_UViG_3300036864_000076\|3300036864\|Ga0376053_0000628_29174_29398	50.300	1.853E-16	70	0.828%	IMGVR	PF26761	phrog_6162 phrog_8841 phrog_1068 phrog_958 phrog_2631
IMGVR_UViG_3300018481_000018\|3300018481\|Ga0190271_1000001748	54.800	1.349E-16	71	0.747%	IMGVR	PF26761	phrog_6162 phrog_8841 phrog_1068 phrog_958 phrog_2631
IMGVR_UViG_3300050500_000161\|3300050500\|nmdc:mga07e63_1550_c1_1980_2183	44.700	4.779E-12	58	0.782%	IMGVR	PF26761	phrog_6162 phrog_8841 phrog_1068 phrog_958 phrog_2631