dbAPIS: a database of anti-prokaryotic immune systems

Seed protein information help

APIS family ID

APIS255

Inhibited defense system

CLAN ID

CLAN002

Seed protein property

Accession ID	Gene name	Protein length	Molecular weight	Isoelectric point	Charge
IMGVR_UViG_2857096214_000002\|2857096214\|2857100266	gene_page:	90	9713.66	4.5358	-5.5

Phage property

Phage	Assembly id

PMID/References

PDB structures

;

Pfam domains

PF26761

Phrog

phrog_1775,phrog_3956,phrog_8917,phrog_453,phrog_1062

Host taxa

Gene Location

Start: ; End: ; Strand:

Description

Note

This family does not have seed protein, but we infer its function is defending Type I CBASS because it belongs to the same clan as family APIS287,APIS361 which has seed protein.

Full Sequence

90 < plddt <=100 ;

70 < plddt <= 90 ;

50 < plddt <= 70 ;

0 <= plddt <= 50 ; Download help

Family information Download help

Fam ID	Seed protein	Member count	Model	Alignment
APIS255	IMGVR_UViG_2857096214_000002\|2857096214\|2857100266	4	HMM model	Member alignment

Host Taxa distribution

Length distribution

Homology to other families help

Clan ID: CLAN002

APIS255 has no similar APIS family.

Family members, sources, and their hosts help

Results of representative protein blast against members.

Member	pident	evalue	bitscore	qcovs	host	SourceDB	Pfam	Phrog
IMGVR_UViG_2857096214_000002\|2857096214\|2857100266	100.000	2.216E-57	188	1.000%	Streptomyces sp002847285	IMGVR	PF26761	phrog_1775 phrog_3956 phrog_8917 phrog_453 phrog_1062
IMGVR_UViG_3300002120_000003\|3300002120\|C687J26616_1000002644	63.300	1.699E-21	85	0.733%		IMGVR	PF26761	phrog_1775 phrog_3956 phrog_8917 phrog_453 phrog_1062
IMGVR_UViG_2934499633_000001\|2934499633\|2934501221	80.100	1.143E-35	126	0.833%	Streptomyces anulatus	IMGVR	PF26761	phrog_1775 phrog_3956 phrog_8917 phrog_453 phrog_1062
IMGVR_UViG_3300025313_000023\|3300025313\|Ga0209431_1000016612	63.300	1.699E-21	85	0.733%		IMGVR	PF26761	phrog_1775 phrog_3956 phrog_8917 phrog_453 phrog_1062