Seed protein information help

APIS family ID APIS244
Inhibited defense system BREX type I
CLAN ID CLAN050
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
WZK98980.1 gene_page: orf72 204 23125.7 10.039 11.5
Phage property
Phage Assembly id
Escherichia phage Dru_SM1 GCA_038396275.1
PMID/References Ojima et al., 2024
PDB structures ;
Pfam domains
Phrog phrog_469,phrog_2885,phrog_124,phrog_2854,phrog_50
Host taxa d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli
Gene Location Start: 52006;  End: 52620;  Strand: -
Description ORF72 has anti-Brex type I activity, was predicted to be a Plasmid replication region DNA-binding N-term

Seed genomic context      Download table help

Genome accession Start End Strand Protein ID Length Molecular weight Charge Isoelectric point Function Phrog PFAM

Seed genomic context- JBrowse     

Predicted 3D structure by alphafold2 with pTM = 0.38 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

No homologs found in esmfold database

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS244 WZK98980.1 29 HMM model Member alignment

Host Taxa distribution

Length distribution

Length Distribution Bar chart

Homology to other families       help

Clan ID: CLAN050

APIS244 has no similar APIS family.

Family members, sources, and their hosts        help

Results of representative protein blast against members.

Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
MGV-GENOME-0328781_70 90.300 2.727E-123 385 0.995% MGV phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
MZ501104_00069 90.200 7.724E-124 386 1.000% Escherichia phage SeppeHuegi Escherichia INPHARED phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
PQ202980_00065 90.600 2.187E-124 388 1.000% Escherichia phage CSP1C Escherichia INPHARED phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
PP627282_00066 91.100 5.635E-124 387 0.990% Escherichia phage KS_S4 Escherichia INPHARED phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
MH230177_00067 91.100 3.296E-125 390 1.000% Aeromonas phage SD04 Aeromonas INPHARED phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
OL960575_00073 91.900 6.810E-126 392 0.995% Escherichia phage vB_EcoS_SA80RD Escherichia INPHARED phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
PP627281_00067 90.800 8.491E-125 389 1.000% Escherichia phage KS_W4 Escherichia INPHARED phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
MZ501091_00068 91.800 1.928E-126 394 1.000% Escherichia phage KurtStettler Escherichia INPHARED phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
KM236243_00066 91.600 1.754E-125 391 0.995% Escherichia phage Seurat Escherichia INPHARED phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
MK672798_00072 91.300 1.280E-125 391 1.000% Escherichia phage Skure Escherichia INPHARED phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
OL960573_00070 91.700 2.643E-126 393 1.000% Escherichia phage vB_EcoS_SA126VB Escherichia INPHARED phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
uvig_291572_23 90.300 2.727E-123 385 0.995% GPD phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
PP627280_00072 91.500 6.810E-126 392 1.000% Escherichia phage SHIN8 Escherichia INPHARED phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
MZ911962_00057 91.500 4.968E-126 392 1.000% Escherichia phage PLYYY01 Escherichia INPHARED phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
uvig_386062_9 90.700 1.596E-124 388 1.000% GPD phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
MZ501110_00066 81.100 1.693E-108 342 1.000% Escherichia phage VogelGryff Escherichia INPHARED phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
OR880647_00004 90.200 1.059E-123 386 1.000% Escherichia phage ECP2304 Escherichia INPHARED phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
uvig_190005_52 89.900 6.391E-122 381 0.990% GPD phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
uvig_594156_58 91.500 6.810E-126 392 1.000% GPD phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
WZK98980.1 100.000 2.562E-129 402 1.000% Escherichia phage Dru_SM1 Escherichia coli NCBI phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
OQ791410_00074 90.000 9.631E-123 383 0.995% Escherichia phage phiG7 Escherichia INPHARED phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
MZ501071_00068 91.200 1.754E-125 391 1.000% Escherichia phage GottfriedDienst Escherichia INPHARED phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
MGV-GENOME-0332986_52 89.900 6.391E-122 381 0.990% MGV phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
PP627279_00070 90.800 8.491E-125 389 1.000% Escherichia phage KS_A8 Escherichia INPHARED phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
LN881725_00018 91.800 1.928E-126 394 1.000% Escherichia phage slur01 Escherichia INPHARED phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
OL539454_00071 91.400 9.335E-126 392 1.000% Escherichia phage vB_EcoS_OddieOddie Escherichia INPHARED phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
LR025197_00083 92.000 7.486E-127 395 1.000% Escherichia phage vB_Eco_SLUR75 Escherichia INPHARED phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
OM868075_00003 52.800 5.299E-61 205 0.995% Hafnia phage yong3 Hafnia INPHARED phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50
OR498732_00050 64.300 4.107E-81 263 1.000% Salmonella phage STP-SP5 Salmonella INPHARED phrog_469 phrog_2885 phrog_124 phrog_2854 phrog_50