dbAPIS: a database of anti-prokaryotic immune systems

Seed protein information help

APIS family ID

APIS229

Inhibited defense system

CLAN ID

CLAN002

Seed protein property

Accession ID	Gene name	Protein length	Molecular weight	Isoelectric point	Charge
IMGVR_UViG_2518645610_000003\|2518645610\|2519025895	gene_page:	149	16211.8	6.3561	-1

Phage property

Phage	Assembly id

PMID/References

PDB structures

;

Pfam domains

PF26761

Phrog

phrog_2034,phrog_1775,phrog_678,phrog_9998,phrog_1885

Host taxa

Gene Location

Start: ; End: ; Strand:

Description

Note

This family does not have seed protein, but we infer its function is defending Type I CBASS because it belongs to the same clan as family APIS287,APIS361 which has seed protein.

Full Sequence

90 < plddt <=100 ;

70 < plddt <= 90 ;

50 < plddt <= 70 ;

0 <= plddt <= 50 ; Download help

Family information Download help

Fam ID	Seed protein	Member count	Model	Alignment
APIS229	IMGVR_UViG_2518645610_000003\|2518645610\|2519025895	4	HMM model	Member alignment

Host Taxa distribution

Length distribution

Homology to other families help

Clan ID: CLAN002

APIS229 has no similar APIS family.

Family members, sources, and their hosts help

Results of representative protein blast against members.

Member	pident	evalue	bitscore	qcovs	host	SourceDB	Pfam	Phrog
IMGVR_UViG_2518645610_000003\|2518645610\|2519025895	100.000	3.444E-103	323	1.000%	Streptomyces sulphureus	IMGVR	PF26761	phrog_2034 phrog_1775 phrog_678 phrog_9998 phrog_1885
IMGVR_UViG_2866649352_000003\|2866649352\|2866658194	45.300	1.018E-26	103	0.826%	Spirillospora sp004348535	IMGVR	PF26761	phrog_2034 phrog_1775 phrog_678 phrog_9998 phrog_1885
IMGVR_UViG_2873121168_000001\|2873121168\|2873125412	67.300	8.856E-32	118	0.577%	Streptomyces qaidamensis	IMGVR	PF26761	phrog_2034 phrog_1775 phrog_678 phrog_9998 phrog_1885
IMGVR_UViG_3300049164_000152\|3300049164\|Ga0494662_001179_20290_20706	76.900	4.716E-32	119	0.497%		IMGVR	PF26761	phrog_2034 phrog_1775 phrog_678 phrog_9998 phrog_1885