dbAPIS: a database of anti-prokaryotic immune systems

Seed protein information help

APIS family ID

APIS217

Inhibited defense system

CLAN ID

CLAN012

Seed protein property

Accession ID	Gene name	Protein length	Molecular weight	Isoelectric point	Charge
KY940711_00071	gene_page:	215	24246.7	8.5861	9

Phage property

Phage	Assembly id

PMID/References

PDB structures

;

Pfam domains

PF10686,PF14216

Phrog

phrog_6128,phrog_1272,phrog_2220,phrog_1469,phrog_381

Host taxa

Gene Location

Start: ; End: ; Strand:

Description

Note

This family does not have seed protein, but we infer its function is defending AVAST type III because it belongs to the same clan as family APIS354 which has seed protein.

Full Sequence

90 < plddt <=100 ;

70 < plddt <= 90 ;

50 < plddt <= 70 ;

0 <= plddt <= 50 ; Download help

Family information Download help

Fam ID	Seed protein	Member count	Model	Alignment
APIS217	KY940711_00071	19	HMM model	Member alignment

Host Taxa distribution

Length distribution

Homology to other families help

Clan ID: CLAN012

APIS217 has no similar APIS family.

Family members, sources, and their hosts help

Results of representative protein blast against members.

Member	pident	evalue	bitscore	qcovs	phage	host	SourceDB	Pfam	Phrog
IMGVR_UViG_3300046513_000217\|3300046513\|Ga0495616_0000038_32533_33243	73.900	3.061E-99	316	0.977%			IMGVR	PF10686	phrog_6128 phrog_1272 phrog_2220 phrog_1469 phrog_381
IMGVR_UViG_3300046665_000262\|3300046665\|Ga0495661_0001246_11789_12445	71.900	2.084E-95	305	0.972%			IMGVR	PF10686	phrog_6128 phrog_1272 phrog_2220 phrog_1469 phrog_381
IMGVR_UViG_2513237137_000001\|2513237137\|2513858612	76.800	2.632E-104	331	0.977%		Bradyrhizobium elkanii	IMGVR	PF10686	phrog_6128 phrog_1272 phrog_2220 phrog_1469 phrog_381
IMGVR_UViG_2888395147_000002\|2888395147\|2888400514	76.800	2.632E-104	331	0.977%		Bradyrhizobium elkanii	IMGVR	PF10686	phrog_6128 phrog_1272 phrog_2220 phrog_1469 phrog_381
IMGVR_UViG_3300046692_000367\|3300046692\|Ga0495671_0003062_9603_10259	76.000	2.173E-102	325	0.972%			IMGVR	PF10686	phrog_6128 phrog_1272 phrog_2220 phrog_1469 phrog_381
IMGVR_UViG_2693430034_000001\|2693430034\|2695391340	76.700	1.273E-103	329	0.972%		Bradyrhizobium ottawaense	IMGVR	PF10686	phrog_6128 phrog_1272 phrog_2220 phrog_1469 phrog_381
IMGVR_UViG_3300033442_000004\|3300033442\|Ga0315911_1000001568	75.400	7.668E-102	323	0.977%		Bradyrhizobium	IMGVR	PF10686	phrog_6128 phrog_1272 phrog_2220 phrog_1469 phrog_381
IMGVR_UViG_3300046557_000242\|3300046557\|Ga0495622_0000127_45176_45829	72.400	3.811E-98	313	0.991%			IMGVR	PF10686	phrog_6128 phrog_1272 phrog_2220 phrog_1469 phrog_381
IMGVR_UViG_3300046557_000651\|3300046557\|Ga0495622_0000773_123_776	73.900	3.061E-99	316	0.977%			IMGVR	PF10686	phrog_6128 phrog_1272 phrog_2220 phrog_1469 phrog_381
IMGVR_UViG_3300046557_000419\|3300046557\|Ga0495622_0000108_57940_58593	72.600	1.480E-98	314	0.991%			IMGVR	PF10686	phrog_6128 phrog_1272 phrog_2220 phrog_1469 phrog_381
IMGVR_UViG_2926911820_000002\|2926911820\|2926920570	77.200	5.441E-105	332	0.977%		Bradyrhizobium elkanii	IMGVR	PF10686	phrog_6128 phrog_1272 phrog_2220 phrog_1469 phrog_381
IMGVR_UViG_2927298702_000001\|2927298702\|2927298845	77.300	3.970E-105	333	0.977%		Bradyrhizobium elkanii	IMGVR	PF10686	phrog_6128 phrog_1272 phrog_2220 phrog_1469 phrog_381
IMGVR_UViG_2927464213_000002\|2927464213\|2927464451	77.800	5.988E-106	335	0.977%		Bradyrhizobium diazoefficiens	IMGVR	PF10686	phrog_6128 phrog_1272 phrog_2220 phrog_1469 phrog_381
IMGVR_UViG_3300046457_000175\|3300046457\|Ga0495590_0000046_21394_22047	72.600	1.480E-98	314	0.991%			IMGVR	PF10686	phrog_6128 phrog_1272 phrog_2220 phrog_1469 phrog_381
KY940711_00071	100.000	3.363E-153	471	1.000%	Bradyrhizobium phage BDU-MI-1	Bradyrhizobium	INPHARED	PF10686	phrog_6128 phrog_1272 phrog_2220 phrog_1469 phrog_381
IMGVR_UViG_3300046665_000427\|3300046665\|Ga0495661_0000767_3442_4152	71.400	5.366E-95	304	0.977%			IMGVR	PF10686	phrog_6128 phrog_1272 phrog_2220 phrog_1469 phrog_381
IMGVR_UViG_3300046460_000155\|3300046460\|Ga0495638_0001803_17899_18555	70.800	2.356E-93	299	0.972%			IMGVR	PF10686	phrog_6128 phrog_1272 phrog_2220 phrog_1469 phrog_381
IMGVR_UViG_3300046524_000341\|3300046524\|Ga0495648_0001317_574_1215	67.000	9.635E-88	283	0.977%			IMGVR	PF10686	phrog_6128 phrog_1272 phrog_2220 phrog_1469 phrog_381
IMGVR_UViG_3300021363_000024\|3300021363\|Ga0193699_1000035221	57.200	2.026E-72	239	0.972%			IMGVR	PF10686	phrog_6128 phrog_1272 phrog_2220 phrog_1469 phrog_381