Seed protein information help

APIS family ID APIS207
Inhibited defense system toxin-antitoxin (TA)
CLAN ID CLAN092
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
AXY82238.1 gene_page: adfB 76 8775.07 4.9295 -1.5
Phage property
Phage Assembly id
Vibrio phage ICP1 GCA_003575525.1
PMID/References PMID:39287445
PDB structures ;
Pfam domains
Phrog phrog_9306,phrog_8841,phrog_148,phrog_4390,phrog_437
Host taxa d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;
Gene Location Start: 86194;  End: 86424;  Strand: -
Description AdfB functions as an antitoxin, abrogating DarT toxicity through direct interactions.

Seed genomic context      Download table help

Genome accession Start End Strand Protein ID Length Molecular weight Charge Isoelectric point Function Phrog PFAM

Seed genomic context- JBrowse     

Predicted 3D structure by alphafold2 with pTM = 0.74 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

No homologs found in esmfold database

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS207 AXY82238.1 6 HMM model Member alignment

Host Taxa distribution

Length distribution

Length Distribution Bar chart

Homology to other families       help

Clan ID: CLAN092

APIS207 has no similar APIS family.

Family members, sources, and their hosts        help

Results of representative protein blast against members.

Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
HQ634157_00175 64.600 1.801E-22 87 0.868% Vibrio phage 11895-B1 Vibrio INPHARED phrog_9306 phrog_8841 phrog_148 phrog_4390 phrog_437
MGV-GENOME-0372901_128 100.000 1.026E-49 165 1.000% Vibrio MGV phrog_9306 phrog_8841 phrog_148 phrog_4390 phrog_437
MZ292654_00137 100.000 1.026E-49 165 1.000% Vibrio phage ICP1 Vibrio INPHARED phrog_9306 phrog_8841 phrog_148 phrog_4390 phrog_437
AXY82238.1 100.000 1.120E-50 168 1.000% Vibrio phage ICP1 Vibrio NCBI phrog_9306 phrog_8841 phrog_148 phrog_4390 phrog_437
IMGVR_UViG_3300036546_000136|3300036546|Ga0377192_000064_40991_41203 64.400 2.474E-22 87 0.868% IMGVR phrog_9306 phrog_8841 phrog_148 phrog_4390 phrog_437
OX241437_00234 45.700 2.303E-13 61 0.921% Vibrio phage 424E50-1 Vibrio INPHARED phrog_9306 phrog_8841 phrog_148 phrog_4390 phrog_437