Seed proteins |
Seed protein 3D structures |
Structural homologs |
Family infomation |
Homology to other families |
Family members, sources, and their hosts
Seed protein information help
| APIS family ID | APIS206 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN012 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF10686 | |||||||||||||
| Phrog | phrog_29,phrog_10818,phrog_8841,phrog_1649,phrog_514 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending AVAST type III because it belongs to the same clan as family APIS354 which has seed protein. | |||||||||||||
Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
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Family information Download help
| Fam ID | Seed protein | Member count | Model | Alignment | APIS206 | IMGVR_UViG_3300045836_000009|3300045836|Ga0466958_0000066_1255_1716 | 4 | HMM model | Member alignment |
|---|
Host Taxa distribution
Length distribution
Family members, sources, and their hosts help
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300045836_000009|3300045836|Ga0466958_0000066_1255_1716 | 100.000 | 1.250E-107 | 336 | 1.000% | IMGVR | PF10686 | phrog_29 phrog_10818 phrog_8841 phrog_1649 phrog_514 | ||
| IMGVR_UViG_3300045049_000080|3300045049|Ga0466959_0000095_30836_31300 | 66.500 | 2.705E-61 | 203 | 0.987% | IMGVR | PF10686 | phrog_29 phrog_10818 phrog_8841 phrog_1649 phrog_514 | ||
| IMGVR_UViG_3300044684_000069|3300044684|Ga0466966_0000233_28246_28710 | 67.800 | 6.129E-63 | 208 | 0.987% | IMGVR | PF10686 | phrog_29 phrog_10818 phrog_8841 phrog_1649 phrog_514 | ||
| IMGVR_UViG_3300019124_000103|3300019124|Ga0193592_100012769 | 63.000 | 4.835E-47 | 162 | 0.830% | IMGVR | PF10686 | phrog_29 phrog_10818 phrog_8841 phrog_1649 phrog_514 |