Seed proteins |
Seed protein 3D structures |
Structural homologs |
Family infomation |
Homology to other families |
Family members, sources, and their hosts
Seed protein information help
| APIS family ID | APIS202 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN002 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF26761 | |||||||||||||
| Phrog | phrog_442,phrog_2979,phrog_148,phrog_2331,phrog_1211 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending Type I CBASS because it belongs to the same clan as family APIS287,APIS361 which has seed protein. | |||||||||||||
Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
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Family information Download help
| Fam ID | Seed protein | Member count | Model | Alignment | APIS202 | IMGVR_UViG_3300020037_002393|3300020037|Ga0206644_10000862 | 5 | HMM model | Member alignment |
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Host Taxa distribution
Length distribution
Family members, sources, and their hosts help
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300020037_002393|3300020037|Ga0206644_10000862 | 100.000 | 2.924E-59 | 194 | 1.000% | IMGVR | PF26761 | phrog_442 phrog_2979 phrog_148 phrog_2331 phrog_1211 | ||
| IMGVR_UViG_3300046500_000278|3300046500|Ga0495596_0008776_2400_2696 | 50.000 | 2.350E-20 | 82 | 0.924% | IMGVR | PF26761 | phrog_442 phrog_2979 phrog_148 phrog_2331 phrog_1211 | ||
| IMGVR_UViG_3300021404_000007|3300021404|Ga0210389_10000068161 | 55.600 | 1.603E-23 | 91 | 0.902% | IMGVR | PF26761 | phrog_442 phrog_2979 phrog_148 phrog_2331 phrog_1211 | ||
| IMGVR_UViG_3300047160_004240|3300047160|Ga0500728_00085573_4453_4752 | 59.600 | 4.816E-21 | 84 | 0.761% | IMGVR | PF26761 | phrog_442 phrog_2979 phrog_148 phrog_2331 phrog_1211 | ||
| IMGVR_UViG_3300012204_000054|3300012204|Ga0137374_100451503 | 51.000 | 4.430E-20 | 81 | 0.891% | IMGVR | PF26761 | phrog_442 phrog_2979 phrog_148 phrog_2331 phrog_1211 |