Seed protein information help

APIS family ID APIS190
Inhibited defense system
CLAN ID CLAN039
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
IMGVR_UViG_3300043908_003701|3300043908|Ga0466286_000809_5255_7327
gene_page: 690 77570.12 5.2392 -11.5
Phage property
Phage Assembly id
IMGVR_UViG_3300043908_003701
PMID/References
PDB structures ;
Pfam domains PF07728.19,PF00004.34,PF07726.16,PF08406.15,PF13401.11
Phrog phrog_249
Host taxa ;;;;;;
Gene Location Start: ;  End: ;  Strand: 
Description
Note This family does not have seed protein, but we infer its function is defending restriction-modification (RM) because it belongs to the same clan as family APIS166 which has seed protein.

Predicted 3D structure by alphafold2 with pTM = 0.54 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

Structure homologs against by esmdb (html) ; download full result table

Hit Query start Query end Hit start Hit end TMscore(ali) TMscore(avg)
MGYP003686209621.pdb 323 677 1 345 0.948 0.7097
MGYP001269374496.pdb 349 687 3 332 0.9366 0.692
MGYP001189287878.pdb 357 683 1 324 0.933 0.6874
MGYP000091352304.pdb 344 686 7 348 0.897 0.6729
MGYP001588267429.pdb 170 677 3 378 0.8692 0.6705
MGYP003376661277.pdb 213 684 1 345 0.8881 0.6666
MGYP003122295038.pdb 345 679 27 357 0.9247 0.6508
MGYP002735213195.pdb 192 680 1 356 0.8603 0.6504
MGYP000117001429.pdb 58 676 6 356 0.8566 0.6468
MGYP002641684555.pdb 35 677 1 415 0.8074 0.6446

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS190 IMGVR_UViG_3300043908_003701|3300043908|Ga0466286_000809_5255_7327 6 HMM model Member alignment

Host Taxa distribution

Length distribution

Length Distribution Bar chart

Homology to other families       help

Clan ID: CLAN039

APIS190 has no similar APIS family.